Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02961 ATGGATTTAGAAGAAAGTGAAACAGATTCAGTGATGACTCAAGTTAGCATAGGCGGATTTGATAATGAAGTAAAGGCTTATGATCTTGTGTCGTTCCTGGAATCAAGAATTGGATATGTAGATAGATGTCGACTGAAGACTTCTTGTACTCCTCCAGAGTCATATCCAGAATTTAATATCACTAATACGGCACAAATTGAAACAACAGATGACTATAAGAAGGTGGCGCCTCATGCCTTTGTGCATTTCACTTTGCAGGAATCTGCAACTGAGGCCCTCAATGCTTCGGGTCAATGTGATCTGTTTTTGCATAATCAGCCACTAACGGTCCTCTGTGGGCCACAAAATCCAAACTTTCTGAATCGAAGGAGGCGAACTGCAACTCCTTTTAAGATGTCTGATGTAATTGTGGAAATTGGGACTTTGGTTAGCCCAGAGGAGTTTGTTGTTGCTTGGAGAGGACCTGATAAAGGGCTAAACTTTCTAGTAGACCCTTTTGACAGCATGTGCAAGCTTTGTTTCAATCGGGATACTGCTTTCTCATTCAAAGGAATAGCCAAAACAACAGTGATAAAGTGTGATTTTAAGGTGGGATTCTTGGTTAGAGATATAGAAGAGATCAAAAGATATGATGATACATCACATCTTGTGGTTTTATTACATCTAGCTTCATCACCTTTGGTTTGGTACAGAACTGCTGATGATGACATTGAAGAATCAGTCACAATTGATCTGTTGGATGACGATGATCCTTGGATTAGGACCACCGACTTTACCCCTAGTGGAGCCATTGGTCGATGCAATTTTTATAGAATTTCAATCCCACCTCGTTATGGTGCAAAATTGAATAAGGCCATGGAATATCTGAGATGCCAAAGAGTGCAACGAGTTCCGCTTAAACGGCCACTTAGGATACTTAATGAACCTGATTTTGGGGTGCCCATGTCAAGTGCTTTCTTCTACATAGATTTTCAGAAGGACATCACTTTTGATATAATGTTCTTGATTAATGCAATTGTACACAAAGGAATATTCAATCAGTATAGTTTATCATACAAGTTTTTTGAATTGCTGAGAAGTCAACCTAAGGATGTCAATGTGGCTGCCCTGAAGCACTTATGTTCTTACAAGCGCCCAGTTTTTGATGCAGCTAAGAGGCTGAAAACAGTCCAAGAATGGTTGCTCAGAAATCCAAAACTTTATGAGATCTCAAAGCAGTTCGATGATATTATGGAGGTTAGAAGGCTGGTTATTACTCCTACAAAAGCTTACTGTATAGCTCCAGAAGTTGAATTGTCGAATCGGGTTCTCAGAAGATTTAGAGAAGTTTCAGACCGATTTTTGAGAGTCACCTTTATGGATGAAGGAATGCAGACACTTAATGTACATGCTCTTAACTATTATGTTGCTCCCATTGTGAAGGAAATCACATCAAACTCCTTTCCACAGAAGACAAGAATATATAAAAGGGTGAAGACAATCCTGGAAGAAGGGTTTTACTTTTGTGGCCGAAAATACTCATTTTTAGCTTTTTCGTCCAATCAACTTAGAGACCGTTCTGCTTGGTTTTTTGCCGAAGACAACAACATAACTTGTGATGATATAAGAAATTGGATGGGCAAGTTTAACCAGAGGAATGTAGCAAAGTGTGCTGCGAGGATGGGACAGTGCTTCTCATCCACTTATGCATCTGTGGAAGTTGCTGCAAATGAAGTTAACTCGATGCTAGCTGATGTGGAGAGAAACAATTATGTATTCTCTGATGGTATTGGTATTATCACTAATGATCTTGCAGTTGAAGTTGCTGAAAAATTGAAATTGGACAAGGTACCCTCTGCCTATCAGATCAGGTATGCTGGATTTAAGGGAGTTGTAGCCTGTTGGCCTCCTAAAGGGGACGGAATCAGACTTTCTTTGAGGCCCAGCATGAACAAGTTTCAATCAACTCATACAACCTTGGAAATCTGTGCCTGGACCAGGTTTCAACCTGGTTTCCTTAACAGGCAGATTATAACATTGCTTTCTGCTCTGGATGTGTCTGATGGAATATTCTGGGACATGCAGGAGGTAATGATTTCAAGGTTAAATCAAATGCTGGTTGATGCAGATGTGGCCTTTGACGTTCTGACCAAGTCTTGTGCTGAGCATGGAAATGCTGCAGCAATAATGTTAAGCTGTGGCTTCAGTCCTAAAACAGAACCTCATCTTAGAGGCATGTTAAATTCTATACGTGCTGCACAGCTTTGGGGCCTTAGAGAAAAGTCAAGGATTTTTGTTTCATCTGGGAGATGGTTGATGGGTGTCTTAGATGAATTGGGTGTACTTGAACAAGGTCAATGCTTTGTTCAAGTGTCTACTCCTTCTCTTGAAAATTGTTTCTCAAAGCATGGCTCAAGATTTTCAGAAACAAAAACCCTGCAAGTGGTTAAAGGTCTCGTGGTTATAGCGAAAAATCCGTGTCTTCACCCTGGAGATGTAAGAGTTTTGGAGGCAGTTGATGTCCCTGATTTACATCATTTATATGACTGCCTTGTTTTCCCTCAAAAGGGTGAAAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTTGATGGGGATCTATATTTTGTCACATGGGATGGAAATCTCATTCCACCTAGTAAGAGGAGCTGGACACCTATGGAGTATGCTGCTCAAGAAAGCAAGCTTCACACACGGCAAGTCACTATCCGGGACATCATAGATTTTTTTGTCAAAAACATGGTGAATGAGCATTTGGGTTCAATATGCAATGCACACGTGGTGCATGCTGATTGCAGTGACTATGGTGCTTTGGATGAGAAATGCATACACTTGGCCGAGTTAGCAGCCACTGCTGTTGATTTTCCAAAGACCGGCAAGCTTGTCACTATGCCTCCTCATCTGAAACCAAAACTATACCCTGATTTTATGGGGAAAGAGCACCACCAGTCTTACAAGTCTAAGAAAATCCTTGGTAGACTTTATCGACAGATCAAAGATGCTTATGACAAAGATATTGATGCACCTGATTTGAACTGTGCATCCAGTGATATTCATTATGATACAGATCTCGAGGTTCCAGGATCTGCTGATTTTATTTCTGATGCATGGTATCAAAAGTGCTCTTATGATGGCCAGTTAAGTGGATTACTGGGTCAATACAAAGTGAAAACAGAAGAAGAAGTTGTCACTGGACAGATCTGGTCCATGCCAAAATACAACAGTAGGAAGCAAGGGGAACTTAAGGAAAGGCTGAAGCACTCATACAGTGCCCTGAAAAAAGAATTTAGGCAAACTTTTGAGAAACTGAATTTAGATATTGGAGAGTTAAGCGATGAAGAAAAAAATTTGTTGTATGAACAGAAAGCTTCAGCTTGGTATCAGGTGGCATATCATCCTAAATGGGTGAAAAGATCCCATGATTTGAAAGTTAAATCCTCAGACAACCAAGAGGCAGATAGTTTGGGGAATATGGTGATGTTGAGTTTTCCTTGGATTGCAGTTGATTACCTAGCTCGCACAAAGATAAGGCGCCGTAGAGTTGAAAATTTTGATTCAGTCAAGCCAGTTGATTCTCTGGCAAAGTATTTATCTGAAAGGTTATAG 3606 0.4049 MDLEESETDSVMTQVSIGGFDNEVKAYDLVSFLESRIGYVDRCRLKTSCTPPESYPEFNITNTAQIETTDDYKKVAPHAFVHFTLQESATEALNASGQCDLFLHNQPLTVLCGPQNPNFLNRRRRTATPFKMSDVIVEIGTLVSPEEFVVAWRGPDKGLNFLVDPFDSMCKLCFNRDTAFSFKGIAKTTVIKCDFKVGFLVRDIEEIKRYDDTSHLVVLLHLASSPLVWYRTADDDIEESVTIDLLDDDDPWIRTTDFTPSGAIGRCNFYRISIPPRYGAKLNKAMEYLRCQRVQRVPLKRPLRILNEPDFGVPMSSAFFYIDFQKDITFDIMFLINAIVHKGIFNQYSLSYKFFELLRSQPKDVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYEISKQFDDIMEVRRLVITPTKAYCIAPEVELSNRVLRRFREVSDRFLRVTFMDEGMQTLNVHALNYYVAPIVKEITSNSFPQKTRIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDNNITCDDIRNWMGKFNQRNVAKCAARMGQCFSSTYASVEVAANEVNSMLADVERNNYVFSDGIGIITNDLAVEVAEKLKLDKVPSAYQIRYAGFKGVVACWPPKGDGIRLSLRPSMNKFQSTHTTLEICAWTRFQPGFLNRQIITLLSALDVSDGIFWDMQEVMISRLNQMLVDADVAFDVLTKSCAEHGNAAAIMLSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKTLQVVKGLVVIAKNPCLHPGDVRVLEAVDVPDLHHLYDCLVFPQKGERPHTNEASGSDLDGDLYFVTWDGNLIPPSKRSWTPMEYAAQESKLHTRQVTIRDIIDFFVKNMVNEHLGSICNAHVVHADCSDYGALDEKCIHLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEHHQSYKSKKILGRLYRQIKDAYDKDIDAPDLNCASSDIHYDTDLEVPGSADFISDAWYQKCSYDGQLSGLLGQYKVKTEEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQTFEKLNLDIGELSDEEKNLLYEQKASAWYQVAYHPKWVKRSHDLKVKSSDNQEADSLGNMVMLSFPWIAVDYLARTKIRRRRVENFDSVKPVDSLAKYLSERL 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02961 1201 Coils Coil 1093 1113 - -
Car05g02961 1201 PANTHER RNA-DEPENDENT RNA POLYMERASE 6 7 1200 - -
Car05g02961 1201 Pfam RNA dependent RNA polymerase 418 998 IPR007855 GO:0003968
Car05g02961 1201 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1200 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02961 Car-Chr5 74550213 74556269 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02961 K11699 - gmx:100795178 2082.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02961 05 74550213 74556269 Car05g02961 05 74550213 74556269 ECH