Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02909 ATGAATCACGTTGGTTCGAGCAAAGACGGTAACAAAGCGGGGTTCGAAACGAAGGATCATGAAGATTACGACATCGACATGGAAATGGACATTGACCTTGAAGACGAAGATCCATCCTACACCGAAATCCTCAAAGAGTTAGGTGATGATATGGTTCGTTATTTCTGCAAGAAAGCTTCGATTATGTTCTTCGATGAGTACGGTCTTATAAGTCACCAAATCAATTCGTACAATCAATTTGCTACTTCTGGTCTTCAAAATACCTTCGATTCGTTCGGTGATTTAACCGTTACGCCTGGTTTTGATCCTTCTAAGAAAGGAGATAACGAACATTACCGTTATGCTTCTGTTAAGTTTGGTAAGGTTACGCTTGATCGACCTATGTTTTGGTGTGGTGAAGGGAATACTCAGGAGATGAAGATGCTTCCTAGACATGCTCGTCTTCAGAGGATGACTTATGCTTCCAAAATGAAAGTTAATGTTCAAGTTCAGGTGTATATTCCGAAGAAGGTTCGTAGTGATAAATTTAAGACAGGAAAAGAGGAGTACATTGATAGAGAGATTATTATGGACGAGAACAGAGAAATAACCATTGGGAGACTGCCTGTGATGGTCAAGTCTGATCTTTGCTGGATGAATGGTGTTGAAAAGGGTGATTGTGAATTTGATCACGGAGGCTACTTTCTGATCAAGGGTGCTGAGAAGATTTTTATTGCACAGGAGCAAATCTTTCTAAAGAGGCTTTGGGTTACAAATGTTCCGTATTGGGCAGTTGCATACAAGTCACAGATGAAGAGAAATAGGATGGTCGTTAAATTGGTGGAAAATACAACAGTTGAAGGGATTAAAAATGGAGAGAAGGTGCTCACAGTATATTTTCTGTCTGTCGAAATTCCTGTATGGTTACTGTTTTTTGCTCTTGGTGTCACTTCAGATAAGCAGATTGTTGATCTCATCGATTATGGAGAGGGAGATGGGAGAATTCAAAATATTCTCTTTGCTTCCATTCGTGAGGCCGATGAGAAATGTGAACAATTTCGTAGAGGAAAGAATGCTCTTCTTTATATAGAGGAACGCGTAAAAGGTGTCCAGTTTCCACCTCCAGAATCTATTGACGAGTGCCTTAATATGTATGTCTTTCCGAACATTAAAGGCTTGAATAGAAAGGCACGGTACCTCGCATACATGGTGAAGGTTCTCTTACTGGCGTATACTGGCCGTCGAAAAACTGACAATAGGGATGATTTTAGAAATAAGAGGCTTGAGTTGGCTGGTGAGCTGCTAGAACGCGAGCTAAAAGTGCACATTGCACATGCTCGGAAGCGAATGGCGAAGGCTCTGCAGAGAGACCTTTATGGAGATCGAGATGTTCATCAAATTGAGCACTATCTTGATGCTTCCATTATTACAAATGGTCTTCAACGAGCATTTTCTACTGGAGCATGGACACATCCTTATAAAAGGATGGAAAGGATTTCTGGTGTGGTGGCAACCCTTGGCCGAACCAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTTTGTTTCCTCTCTACCCCCGACGGTGAAAATTGTGGACTAGTAAAAAATATGGCCGTCACAGGGCTCGTAAGTACCAATGTAACTGAATCTATACTCCCTCAGTTGTTTGCTTGTGGGATGGAAGAACTTGTCGATGATACTACTGCTGTTCTTGGAAACAAAGACAAAGTCTTTCTAAATGGAGACTGGGTTGGAGTTTGTTCAGATTCCGCATCATTTGTGGCAGAGCTGCGAAATAGAAGAAGGAAAAATGAATTGCCTCATCAGGTGGAAATCAAAAGAGATCCAAGTCAAGAAGAAGTGCGCATATTATCTGATGCAGGAAGGATTCTTCGTCCACTCTTAGTAGTTAGTAATCTACTAAAGATTAAAGGATCTAAATCGGATCCAAAATCTTTCCAATCCCTATTGGATAATGGCCTGATTGAGCTGATTGGTCCTGAAGAAGAAGAGGACTGCAAGACTGCATGGGGTGTTCCATATTTATTTGGCAAAGAGGGAAAATCTTCCGTGAAGTATACACATTGTGAACTTGATATGTCATTCTTATTGGGTCTAAGCTGTTCACTTGTTCCATTTGCTAATCATGACCATGCTAGGAGAGTGCTGTATCAATCTCAAAAGCACTCCTCACAGGCTATTGGCTTTTCTACAACAAACCCGGATATTAGAGTTGATGCTTTGTCTCACCAATTATTTTATCCTCAAAAACCACTGTTTCAGACAATGACATCTGATTGTCTTGGAAAACCTGGATATCTGGGTCCGAGTAAACTTCTTCCGAAGTCCGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTTGGATATAATCAAGAAGATTCCTTGGTGATGAACCGTGCTTCTCTGCAGCGTGGTATGTTCAGATCCGAGCACATAAGGAGTTACAAGGCTGAAAATGAAAATAAGGAATCTACAGAAAAGAAACGGAAACCCGAAGACATTGTAAATTTTGGAAAGATTCAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGATTTCCATTCGTTGGTGCGAATTTGCAGATTGGTGATATTATTATTGGGCGGTGTGCTGATTCAGGGGCGGACCATAGTATAAAGCTAAAACACACCGAGAGGGGTTATGTTCAAAAGGTTGTGCTGTCCTCAAATGATGAGGGGAAGAATTTTGCTGTGGTTTCACTTAGACAGGTTCGAAGTCCAGTTCTTGGAGACAAGTTCTCCAGTATGCATGGACAGAAGGGTGTTTTAGGATTTCTGGAGTCTCAGGAAAACTTTCCTTTCACAAAACAAGGTATTGTTCCTGATATTGTCATAAATCCACACGCATTTCCCTCAAGACAAACTCCCGGGCAACTCCTAGAGGCTGCTTTAGGGAAGGGTATTGCTTGTGTTGGTTCATTGAGAAATGCTACCCCTTTTTCCACTTCCTCTGTTGAAGCCATTACAGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTATACAATGGTAGGACTGGTGAGATGGTCCGTTCACTCATATTTATGGGCCCAACATTCTACCAGCGACTGCACCACATGTCTGAGGATAAAGTAAAATTCAGGAACACAGGCCCAGTTCACCCGCTAACCCGACAGCCTGTTGCTGACAGGAAGCGATTTGGAGGTATCAAGTTTGGTGAAATGGAGCGTGATTGCCTGATAGCTCATGGTGCATCTGCCAACCTGTACGAACGCCTCTTCACCCTGAGTGATTCGTCTCAGATACACATTTGTAGTAAATGCAAAAATGTTGCAAATGTGATCTTACGGCCAGTTTCTGGTGGCCGGAAAATACGAGGCCCCTATTGCCGGTTCTGTGAATCCGCAGATGATATTGTGGTGGCCCATGTCCCGTATGGAGCTAAGTTACTGTGTCAGGAGCTGTTCAGCATGGGCATTAATCTAAAATTTGAAACTGAACTTTGCTAG 3600 0.4228 MNHVGSSKDGNKAGFETKDHEDYDIDMEMDIDLEDEDPSYTEILKELGDDMVRYFCKKASIMFFDEYGLISHQINSYNQFATSGLQNTFDSFGDLTVTPGFDPSKKGDNEHYRYASVKFGKVTLDRPMFWCGEGNTQEMKMLPRHARLQRMTYASKMKVNVQVQVYIPKKVRSDKFKTGKEEYIDREIIMDENREITIGRLPVMVKSDLCWMNGVEKGDCEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVTNVPYWAVAYKSQMKRNRMVVKLVENTTVEGIKNGEKVLTVYFLSVEIPVWLLFFALGVTSDKQIVDLIDYGEGDGRIQNILFASIREADEKCEQFRRGKNALLYIEERVKGVQFPPPESIDECLNMYVFPNIKGLNRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLELAGELLERELKVHIAHARKRMAKALQRDLYGDRDVHQIEHYLDASIITNGLQRAFSTGAWTHPYKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNMAVTGLVSTNVTESILPQLFACGMEELVDDTTAVLGNKDKVFLNGDWVGVCSDSASFVAELRNRRRKNELPHQVEIKRDPSQEEVRILSDAGRILRPLLVVSNLLKIKGSKSDPKSFQSLLDNGLIELIGPEEEEDCKTAWGVPYLFGKEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDALSHQLFYPQKPLFQTMTSDCLGKPGYLGPSKLLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHIRSYKAENENKESTEKKRKPEDIVNFGKIQSKIGRVDSLDDDGFPFVGANLQIGDIIIGRCADSGADHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESADDIVVAHVPYGAKLLCQELFSMGINLKFETELC 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02909 1199 Pfam RNA polymerase Rpb2, domain 7 1098 1196 IPR007641 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Gene3D - 757 945 IPR014724 GO:0003899
Car05g02909 1199 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 53 1197 - -
Car05g02909 1199 Pfam RNA polymerase Rpb2, domain 5 671 717 IPR007647 GO:0006351
Car05g02909 1199 Pfam RNA polymerase Rpb2, domain 4 595 655 IPR007646 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Gene3D - 727 1082 IPR037033 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Gene3D - 410 594 - -
Car05g02909 1199 Gene3D - 62 243 - -
Car05g02909 1199 CDD RNA_pol_B_RPB2 69 1195 IPR015712 GO:0003899|GO:0006351|GO:0032549
Car05g02909 1199 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 37 1196 IPR015712 GO:0003899|GO:0006351|GO:0032549
Car05g02909 1199 Pfam RNA polymerase Rpb2, domain 2 282 422 IPR007642 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 PANTHER DNA-DIRECTED RNA POLYMERASE D SUBUNIT 2B-RELATED 37 1196 - -
Car05g02909 1199 Pfam RNA polymerase beta subunit 68 469 IPR007644 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Gene3D RNA polymerase alpha subunit dimerisation domain 1083 1197 - -
Car05g02909 1199 ProSitePatterns RNA polymerases beta chain signature. 949 961 IPR007121 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Pfam RNA polymerase Rpb2, domain 6 726 1096 IPR007120 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Gene3D RNA polymerase Rpb2, domain 2 251 409 IPR037034 GO:0003677|GO:0003899|GO:0006351
Car05g02909 1199 Pfam RNA polymerase Rpb2, domain 3 499 558 IPR007645 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02909 Car-Chr5 74034131 74041487 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02909 - K16252 gmx:100815934 2037.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02909 05 74034131 74041487 Car05g02909 05 74034131 74041487 ECH