Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02887 ATGGCTAATAACGAACGTGACATGTTCTCAGCTGAAATTGTGAACCGTGGAATTGAATCAACAGGACCAAACGCAGGATCATTAACCTTCTCAGTTAGAGTAAGAAAACGTTTGCCAGATTTTCTACAATCAGTGAACCTTAAGTATGTGAAATTGGGTTACCATTATCTAATAAACCATGGTGTTTATTTGTTCACAATACCAATACTTGTTGTGGTGTTTAGTGCTGAAGTTGGTAGTCTTAGTAGAAAAGATCTTTGGAAGAAACTTTGGGAAGATGCAACTTATGATCTTGCTTCTGTTCTTTCTTCAATTGCTCTTCTTCTTTTCACTCTCACTCTTTACTTCATGTCAAGGCCTCGTCCTATTTATCTCATTGATTTTGCTTGTTATCAACCTCATCATGAACTCAAGGTATCAAGGGAGCAATTCATAGAGCTAGCAAGAAAATCAGGAAAATTCGATGAAGAAAGTTTGAATTTCCAAAAGAGAATAGTAATGTCATCTGGCATAGGTGATGAAACATACATTCCAAAGTCATTAATTTCATCAACAGAAAACACAGCAACAATGAAAGAAGGTAGAGCAGAGGCATCAATGGTTATGTTTGGAGCACTTGATGAACTTTTTGAGAAAACAGGAATTCGTCCAAAAGATGTTGGTGTTCTTGTTGTAAATTGTAGCATCTTCAATCCAACACCATCATTGTCAGCAATGATTATTAATCATTATAAGATGAGAGGAAATATTTTGAGTTATAATCTTGGTGGTATGGGTTGTAGTGCTGGAATTATTTCTGTTGATTTAGCTAGAGATATTCTTCAAGCTAATCCTGGTAATTATGCTGTTGTTGTTAGTACTGAAGCTGTTGGATTTAATTGGTATCAAGGAAAACAAAGATCAATGCTTATTCCAAATTGTTTCTTTCGTATGGGTTGTTCTGCTGTTTTGTTGTCTAATCGTCGTCGTGATTATACTCGTGCTAAATATCGTCTTGAACACATTGTTCGCACTCATAAAGGTGCCGATGATCGCAGCTTCAGGTGTGTGTACCAAGAAGAAGATGAACAAAAATTCAAGGGACTAAAAATAAGCAAAGACTTAATTGAAATTGGTGGTGAAGCTCTAAAAACCAACATAACAACATTAGGACCTTTGGTGCTACCATTTTCTGAGCAAATTCTGTTTTTCACAACATTAGTTTGGAGACACTTATTTGGTGGCAAAAAATCTGATGGAAATTCAACTTCTTCATCAAAAAAGCCATACATTCCTAACTACAAACTAGCTTTTGAGCATTTCTGTGTGCATGCTGCTAGCAAACAAATTCTTGATGAGCTTCAAAAGAACCTTGAATTGAGTGACAAGAACATGGAAGCTTCTAGGATGACATTGCACCGTTTTGGTAACACTTCTAGTAGTAGCATTTGGTATGAACTTGCTTATATGGAAGCAAAGGAAAAAGTTAAAAGAGGAGACCGTGTTTGGCAACTTGCTTTTGGTTCTGGTTTTAAGTGTAACAGTGCTGTTTGGCGTTCTATGCGCCGCGTCACTAAACCCTCTTCTAGGAACCCTTGGCTCGATTGTGTTAACAACTATCCTGTTTCTCTCAATTAA 1617 0.3667 MANNERDMFSAEIVNRGIESTGPNAGSLTFSVRVRKRLPDFLQSVNLKYVKLGYHYLINHGVYLFTIPILVVVFSAEVGSLSRKDLWKKLWEDATYDLASVLSSIALLLFTLTLYFMSRPRPIYLIDFACYQPHHELKVSREQFIELARKSGKFDEESLNFQKRIVMSSGIGDETYIPKSLISSTENTATMKEGRAEASMVMFGALDELFEKTGIRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIISVDLARDILQANPGNYAVVVSTEAVGFNWYQGKQRSMLIPNCFFRMGCSAVLLSNRRRDYTRAKYRLEHIVRTHKGADDRSFRCVYQEEDEQKFKGLKISKDLIEIGGEALKTNITTLGPLVLPFSEQILFFTTLVWRHLFGGKKSDGNSTSSSKKPYIPNYKLAFEHFCVHAASKQILDELQKNLELSDKNMEASRMTLHRFGNTSSSSIWYELAYMEAKEKVKRGDRVWQLAFGSGFKCNSAVWRSMRRVTKPSSRNPWLDCVNNYPVSLN 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02887 538 Pfam FAE1/Type III polyketide synthase-like protein 115 404 IPR013601 GO:0006633|GO:0016020|GO:0016747
Car05g02887 538 SUPERFAMILY Thiolase-like 333 513 IPR016039 GO:0016746
Car05g02887 538 PIRSF Very_long_ch_3-ktacl-CoA_syn 40 538 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car05g02887 538 CDD CHS_like 119 511 - -
Car05g02887 538 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 432 512 IPR013747 -
Car05g02887 538 Gene3D - 118 514 IPR016039 GO:0016746
Car05g02887 538 PANTHER 3-KETOACYL-COA SYNTHASE 10 5 535 - -
Car05g02887 538 Coils Coil 444 464 - -
Car05g02887 538 PANTHER 3-KETOACYL-COA SYNTHASE 5 535 IPR012392 GO:0006633|GO:0016020|GO:0016747
Car05g02887 538 SUPERFAMILY Thiolase-like 109 327 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02887 Car-Chr5 73834244 73837826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02887 3 537 Miscellaneous Gene Families AT2G26250 74.410 0.0 867
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02887 K15397 - gmx:100778487 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02887 05 73834244 73837826 Car05g02887 05 73834244 73837826 ECH