Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02880 ATGCATTTGCGATTGCGAGCCACTTCCATTGTGAACAATCCACTCACCCAACGctctcacctcattcactctcactccaactcacacccttcctctcatctTCCTCAATGGTTCTCCATCCTCCGTCACGCCATCGCAGCCTCCGACTTACTCCTTGGAAAACGCACCCACGCCCTCATTTTAACCTCCGGCCACACTCCCGATCTTTTTCTAACCAACAACCTCATTACCATGTACGCTAAATGCACCTCTCTTACCTCCGCACGCCAACTGTTCGACATAACGCTTCAAAGAGACATCGTAACTTGGAACGCCATTCTCGCCGCGTATGCTCACACCATAGAACTCGATGACTTCCACAAAACCCATGAAGCCTTTCACCTCTTCCGTATTCTCCGTCAATCCACCGTGGTCGCCACTCGTCACACTTTATCTCCTCTCTTCAAGTTGTGTCTTTTCACTGCTTCTCCCTCCGCTTCCGAGACCCTTCACGGTTATGCCGCTAAGATTGGGTTGCAATGGGACGTGTTTGTCGCTGGTGCATTGGTTAATATATATGCTAAGTTTCGACGAATTAGAGAGGCGCGTGTTCTGTTTGATAGAATGCCTGCGAGGGATGTGGTGCTTTGGAATGTCATGTTGAAGGCTTATGTGGAAATGGGTCTTGGTGATGAAGCTTTGGTTCTTTTTTCCGAGTTTCATCGAAGTGGGCTGCGTCCTGATTGCATTAGTGTTCGTACTGTTCTAATGGGGTTTGGTAAGAAAACTGTTTTTGAAAGGGAATTGCAGCAGGTTCGAGCTTATGCTACCAAGTTGTTTATGTGTGATGATGATTCGGATGTTATTGTTTGGAACAAAACTCTATCTTCGTATCTCCAAGCAGGTGAAGCTTGGGAAGCCGTTGATTGCTTTAGAGATATGATCAAATTGCATGTGCCGCTTGATAGCTTGAGTTTTATTGTGATTCTCTCTGTGGTTGCCAGTTTGAATCATCTTGAACTGGGAAAACAGATTCACGGTGCTGTTTTAAGGTTCGGATGGGATCAATTTGTTTCTGTTGGGAATAGCCTTATTAATATGTACATTAAGGGTGGTTCTGTTTATTATGCAAGAAGGATGTTTGGTCAGATGAAAGAAGTTGATTTAATATCGTGGAACACTGTGATATCTGGTTGTGCTCTGAGTGGTTTGGAGGAGGGTTCTTTAAGGTTGTTTATTGGTTTATTACGGAGTGGACTGCTGCCGGACCAATTCACCATTGCAAGTGTTTTGAGGGCTTGCTCTTCTCTTGAAGAAAGCTACTTTCTTGGTAGGCAGGTTCATACTTGTGCTTTAAAAGCTGGGGTCGTCTTAGATTCATTTGTTTCGACAGCTCTAATTGATGTCTATTCTAGGAGTGGACAGATGGAGGAGGCAGCACTTCTTTTTAATAACCAAAATGGATTTGATTTGGCATCTTGGAATGCTATGATGCATGGGCATATAGTGAGTGATAACTATCGTGAAGCCCTGTGGCTATTTAGACTAATGCATGAAAATGGAGAGAAAGCTGATCAGATTACTCTGGCAAATGCGGCTAAAGCTGCTGGGTGTTTGGTGGGGCTTCAACAAGGGAAGCAGATTCATGCTGTTGTTATAAAAATGAGGTTTGATTTTGATTTGTTTGTCATTAGTGGTATTCTGGACATGTATCTAAAGTGTGGAGAGGTGGAAAGTGCACATAAAGTTTTCAATGAAATCCCTTCACCAGATGACATTGCTTGGACCACTATGATTTCGGGATGTGTGGAAAATGGGGAGGAAGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGAGCGTGCTCTTTTTACATATTACCAGATGAGACTTGCTGGGGTGCAACCCGATGAGTATACCTTTGCTACCCTTGTCAAAGCTTGCTCTCTTTTAACAGCACTGGAACAAGGGAAACAAATTCATGCAAATATTATGAAGTTGAATTGTGCGTTTGATCCTTTTGTGATGACCTCACTTGTTGACATGTATGCCAAGTGTGGGAATATAGAAGATGCATATGGTTTATTTAGAAGAATGTACACTAGGAGTGTTGCCTTGTGGAATGCCATGATAGTAGGATTGGCTCAACATGGAAATGCTGAGGAAGCTCTCAATTTCTTCAATGAAATGAAATATAGGGGTAAAAACTATGGAATTGAACCTGAGATTGAGCACTATTCTTGTCTCGTCGATGCCCTTAGCCGTGCAGGGCGCATACAAGAAGCTGAGAAGGTAGTATCATCAATGCCATTTGAAGCTTCTGCTAATATGTATAGAACACTGCTTAATGCATGCAGGGTTCAGGGAGACAAAGAGACCGGAAAACGTGTAGCAGAAAAGCTTTTTACCTTGGATCCATCTGATTCAGCGGCTTATGTTCTGTTATCCAATATTTATGCCGCTGCTAACCAATGGGAAAATGCTGTGAGTGCTAGAAGTTTGATGAGAAGAGTAAATGTAAAGAAGGATCCAGGGTTTAGTTGGGTAGATTTGAAAAACAAGGTGCATTTATTTGTAGCTGGTGATAGATCACACAAAGAGACTGGTTTGATATATAATAAGGTGGAGTATGTTATGAAGAGGATCAGAGAAGAAGGATATGTCCCTGATACAGATTTTACACTTGTTGATATAGAAGAAGAGGATAAAGAGAGTGCTTTATATTATCACAGTGAGAAGCTAGCAATAGCTTATGGGCTCATGAAAACTCCACCATCAACCACATTAAGAGTAATTAAAAACCTTAGAGTATGTGGAGATTGCCATAATGCAATCAAGTATATATCAAAAGTTTTTCAGAGAGAGATTGTTTTGAGAGATGCAAATCGGTTCCATCATTTCAAGAGTGGGATCTGCTCTTGTGGTGATTACTGGTGA 3009 0.3981 MHLRLRATSIVNNPLTQRSHLIHSHSNSHPSSHLPQWFSILRHAIAASDLLLGKRTHALILTSGHTPDLFLTNNLITMYAKCTSLTSARQLFDITLQRDIVTWNAILAAYAHTIELDDFHKTHEAFHLFRILRQSTVVATRHTLSPLFKLCLFTASPSASETLHGYAAKIGLQWDVFVAGALVNIYAKFRRIREARVLFDRMPARDVVLWNVMLKAYVEMGLGDEALVLFSEFHRSGLRPDCISVRTVLMGFGKKTVFERELQQVRAYATKLFMCDDDSDVIVWNKTLSSYLQAGEAWEAVDCFRDMIKLHVPLDSLSFIVILSVVASLNHLELGKQIHGAVLRFGWDQFVSVGNSLINMYIKGGSVYYARRMFGQMKEVDLISWNTVISGCALSGLEEGSLRLFIGLLRSGLLPDQFTIASVLRACSSLEESYFLGRQVHTCALKAGVVLDSFVSTALIDVYSRSGQMEEAALLFNNQNGFDLASWNAMMHGHIVSDNYREALWLFRLMHENGEKADQITLANAAKAAGCLVGLQQGKQIHAVVIKMRFDFDLFVISGILDMYLKCGEVESAHKVFNEIPSPDDIAWTTMISGCVENGEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERALFTYYQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMYTRSVALWNAMIVGLAQHGNAEEALNFFNEMKYRGKNYGIEPEIEHYSCLVDALSRAGRIQEAEKVVSSMPFEASANMYRTLLNACRVQGDKETGKRVAEKLFTLDPSDSAAYVLLSNIYAAANQWENAVSARSLMRRVNVKKDPGFSWVDLKNKVHLFVAGDRSHKETGLIYNKVEYVMKRIREEGYVPDTDFTLVDIEEEDKESALYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFQREIVLRDANRFHHFKSGICSCGDYW 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02880 1002 Gene3D Tetratricopeptide repeat domain 535 680 IPR011990 GO:0005515
Car05g02880 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 696 726 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 587 600 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 457 477 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 560 580 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 355 379 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 731 758 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 486 514 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 283 310 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 700 724 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 383 413 IPR002885 -
Car05g02880 1002 Pfam PPR repeat 769 793 IPR002885 -
Car05g02880 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Car05g02880 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Car05g02880 1002 TIGRFAM PPR: pentatricopeptide repeat domain 701 727 IPR002885 -
Car05g02880 1002 TIGRFAM PPR: pentatricopeptide repeat domain 770 793 IPR002885 -
Car05g02880 1002 TIGRFAM PPR: pentatricopeptide repeat domain 730 755 IPR002885 -
Car05g02880 1002 TIGRFAM PPR: pentatricopeptide repeat domain 486 518 IPR002885 -
Car05g02880 1002 TIGRFAM PPR: pentatricopeptide repeat domain 208 242 IPR002885 -
Car05g02880 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 415 IPR002885 -
Car05g02880 1002 SUPERFAMILY TPR-like 213 854 IPR011990 GO:0005515
Car05g02880 1002 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 644 758 - -
Car05g02880 1002 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 128 231 - -
Car05g02880 1002 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 50 143 - -
Car05g02880 1002 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 234 602 - -
Car05g02880 1002 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 759 995 - -
Car05g02880 1002 Gene3D Tetratricopeptide repeat domain 279 433 IPR011990 GO:0005515
Car05g02880 1002 Gene3D Tetratricopeptide repeat domain 724 883 IPR011990 GO:0005515
Car05g02880 1002 Gene3D Tetratricopeptide repeat domain 21 159 IPR011990 GO:0005515
Car05g02880 1002 Pfam E motif 814 874 IPR046848 -
Car05g02880 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Car05g02880 1002 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Car05g02880 1002 Coils Coil 644 646 - -
Car05g02880 1002 PANTHER - 128 231 - -
Car05g02880 1002 PANTHER - 50 143 - -
Car05g02880 1002 PANTHER - 234 602 - -
Car05g02880 1002 PANTHER - 759 995 - -
Car05g02880 1002 Coils Coil 596 602 - -
Car05g02880 1002 Gene3D Tetratricopeptide repeat domain 160 273 IPR011990 GO:0005515
Car05g02880 1002 Gene3D Tetratricopeptide repeat domain 434 532 IPR011990 GO:0005515
Car05g02880 1002 PANTHER - 644 758 - -
Car05g02880 1002 Pfam PPR repeat family 205 252 IPR002885 -
Car05g02880 1002 Pfam DYW family of nucleic acid deaminases 910 1002 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02880 Car-Chr5 73763065 73766169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02880 283 793 Glycoside Hydrolase AT3G49170 24.618 1.56e-38 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02880 - - gsj:114408324 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02880 05 73763065 73766169 Car05g02880 05 73763065 73766169 ECH