Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02874 ATGGGTATTGAAAGATTATATTGGGCCATCATTGTAGCATGGCTTACTTTGTTCCAAGGAAACATGATAATATTTGTTAAGGGTGAATTTAATTATAAAGAGGCTCTCACAAAATCCCTTATTTTCTTAGAGGCACAAAGATCAGGAAAACTCCCTCCCAATAATAGGGTTCCTTGGAGAGGAGACTCAGCACTAGACGACGGAAAACTTGCTAATGTGGACCTAGCTGGTGGATATTATGATGCAGGGGATAATGTGAAATATGGATTACCAATGGCTTTCACTGTTACTACATTATCATGGGCTGCAATTTTTTACAAATCAGAATTTGAAGCAACAAAGGAACTAGGAAATATTCAAGATGCAATTAAATGGGGTACAGATTATTTTATAAAAGCTAGTTCTAGAAGACAGAGATTATATGTTCAAGTAGGAGATGCAGAAGAAGATCATCATTGTTGGGCTCCACCAGAACTTATGAAAACAAAAAGGTCTGTTTTGCAAATTGATAGTAACACACCTGGAACTGAAATTGCAACTGAAACCTCGGCTGCAATGGCTGCTTCTTCCATTGTTTTTCGACACGTCGATAAAAAATATGCTCGTCAACTCCTCAACAAAGCAAAATTGCTTTTCGATATGGCGAAATCGCATAAAGGAACTTATGATGGAGAATGTCCCTTCTACTGCTCTTATTCGGGCTACAATGATGAATTGATGTGGGCAGCAACATGGCTATACATGGCAACAAGGAAACAAGTGTACATGAAATACATACAAGAAGAAGCAATTAGTGCAAGTGTAGCTGAATTCAGTTGGGATCTAAAATATGCTGGAGTTCAAGTCCTTCTTACTCAGTTACATTTTGAAGGTCAAAAAAATCTTGAAACATTCAAAACCCATGGTGAAAGTTTCATATGCTCTGTCCTTCCTGATAGTCCTTACCACCAAATTAATTTGTCTCCTGGTGGGTTTATTCATTTGAGAGATGGAGCCAACACACAATATGCCACTAGCACAGCTTTCTTATTCACTGTATATAGTGATTTGCTTGCCAAATATAAACAGAAAATCACATGTGGAAGCAAACAATTTTCCTCATCTGATCTCCTTGCCTTTGCTAAGAAACAAATGGATTACATATTGGGGAAAAATCCAGAAGGAAGATCATACATGGTAGGATTTGGAAACAACCCACCAACACAAGCTCACCATAGAGGTGCTTCAGTGCCAAAGTTACCACCAAATGAAGAGATAAACTGTGCATTGAGCTTTTCAAAATGGCTTCAAAGAGACGCACCAAACCCACATGAACTAACTGGAGCCATTGTTGGTGGACCTGACTGCAAAGACAAGTTCGATGATAAACGTACGGATTCACCTAAGACTGAACCTTGTACATATGTTAACTCCCTTGCAGCTGGAGCTCTAGCAAAACTTGCTTCTTTGGGTTAA 1455 0.3869 MGIERLYWAIIVAWLTLFQGNMIIFVKGEFNYKEALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVDLAGGYYDAGDNVKYGLPMAFTVTTLSWAAIFYKSEFEATKELGNIQDAIKWGTDYFIKASSRRQRLYVQVGDAEEDHHCWAPPELMKTKRSVLQIDSNTPGTEIATETSAAMAASSIVFRHVDKKYARQLLNKAKLLFDMAKSHKGTYDGECPFYCSYSGYNDELMWAATWLYMATRKQVYMKYIQEEAISASVAEFSWDLKYAGVQVLLTQLHFEGQKNLETFKTHGESFICSVLPDSPYHQINLSPGGFIHLRDGANTQYATSTAFLFTVYSDLLAKYKQKITCGSKQFSSSDLLAFAKKQMDYILGKNPEGRSYMVGFGNNPPTQAHHRGASVPKLPPNEEINCALSFSKWLQRDAPNPHELTGAIVGGPDCKDKFDDKRTDSPKTEPCTYVNSLAAGALAKLASLG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02874 484 Pfam Glycosyl hydrolase family 9 32 477 IPR001701 GO:0004553|GO:0005975
Car05g02874 484 SUPERFAMILY Six-hairpin glycosidases 28 482 IPR008928 GO:0005975
Car05g02874 484 PANTHER ENDO-1,4-BETA-GLUCANASE 7 481 - -
Car05g02874 484 Gene3D - 26 484 IPR012341 GO:0005975
Car05g02874 484 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 380 406 IPR018221 -
Car05g02874 484 PANTHER ENDOGLUCANASE 16-RELATED 7 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02874 Car-Chr5 73699236 73701915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02874 23 482 Glycoside Hydrolase AT3G43860 70.716 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02874 K01179 - gmx:100811509 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02874 05 73699236 73701915 Car05g02874 05 73699236 73701915 ECH