Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02847 ATGGCGGATCCCTACCACCCATACCCAACTCCTGCACCTTCTGACGGAGCAACCTTTTCCAGAACTAGCTATGCTGGTTTCATTCCATCAGAGACACCATCACTGGCTTCTCCTCATCCTAAATCAACTGATTTTCCGGGCTATGGATCAGATTACCTCCATAAAGATGTAAGCTTGTTCAGGATGGAGCCATATGGTGTTGATGATACTAGGGGCTCTAGAGTTCATTCTGAACATAATGCTACGGGTTATTCTCATCCTGAAGATCCCGAATTAAGTACGAAAAGAGATACTCCATTGGGCGTTAATCCAGGTGTTCCTGATTTGAACAATGAATCGATGCCTAAAAGCAATTATGACGCCGTCCCAGTTACGGCTGCAGAATCAAACATTCTGTTTGTGGGTGGGCTTCCGAAAGATTGCACAAGAAGAGAAGTAGGCCATCTTTTCCGTCCCTTTATCGGCTATAAGGATATCAAACTTGTTCACAAGGAGCCAAGACGTAGTGGGGACAAGTCTATGATTTTGTGTTTTGTGGAGTTTACTGAACCCAAATGTGCTCTCACCGCCATGGAAGCTCTGCAAGGCTACAAGTTTGATGATAAAAAACCTGATTCGTCAATCTTGAAAATCCAGTTTGCACACTTTCCTTTCCGCCCGCCAACTAATGATGGACTATAA 681 0.4435 MADPYHPYPTPAPSDGATFSRTSYAGFIPSETPSLASPHPKSTDFPGYGSDYLHKDVSLFRMEPYGVDDTRGSRVHSEHNATGYSHPEDPELSTKRDTPLGVNPGVPDLNNESMPKSNYDAVPVTAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKLVHKEPRRSGDKSMILCFVEFTEPKCALTAMEALQGYKFDDKKPDSSILKIQFAHFPFRPPTNDGL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02847 226 SUPERFAMILY RNA-binding domain, RBD 111 216 IPR035979 GO:0003676
Car05g02847 226 MobiDBLite consensus disorder prediction 69 98 - -
Car05g02847 226 CDD RRM_RBPMS_like 130 212 - -
Car05g02847 226 SMART rrm1_1 131 207 IPR000504 GO:0003723
Car05g02847 226 MobiDBLite consensus disorder prediction 15 39 - -
Car05g02847 226 MobiDBLite consensus disorder prediction 1 48 - -
Car05g02847 226 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 219 - -
Car05g02847 226 MobiDBLite consensus disorder prediction 69 95 - -
Car05g02847 226 PANTHER PROTEIN COUCH POTATO 8 219 - -
Car05g02847 226 Gene3D - 124 216 IPR012677 -
Car05g02847 226 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 216 IPR000504 GO:0003723
Car05g02847 226 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 203 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02847 Car-Chr5 73515920 73518593 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02847 - - lang:109343815 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02847 05 73515920 73518593 Car05g02847 05 73515920 73518593 ECH