Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02830 ATGGCGGAAGAAGCACAGTATACCCTAAAGCGCAAATACGACGACCAACCCACCGCCACCGACATAGAACTCGAAGTCGCCAACGCCAAATTGCGAGCTCAAGAAGTCGCCGCTCGTCTCCTCAGTGTCACCTCTGCTCCTCCTCTTTCCTACGATGCCAAACGCAACAAGTCCGATAACGGTGCTCCGCAATCTGGTTTCGATTCCTACGATTCGAAACCTCAATACTCTTCTTCTCCTTATGGTTCCAGCAAGAAGATCGATATCCCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAAGCGGCGAAACCATTAAGTATCTTCAGTTGCAGTCTGGTGCTAAAATTCAAATTACTCGTGATATGGATGCTGACCCTAATTCTTCAACTAGGATGGTTGAACTTATGGGTACTCCTGATGCTGTTGCTTCTGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCGGAATCTGGGGGTTCCGGTGGTGGTACTAGACGGATGGCTGCACAGTCTGGGGGTGATGAGTTTGTGATGCAAATACCAAATAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCATCTGGAGCACGGATTCAGGTGATACCGTTGCATCTTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATTGATGGGACACCTGAGCAAATTGAATCAGCTAAGCAATTGGTTAATCAAATCGTCAGTGGTGAGAATCGTCTCAGAAATTCAGCAAGCTCCGGTGGTTATAATCAGCAAGGTTACCAATCCCGACCACCATCTAGCTGGGCTCCCCCTGCTGCTCCTGTGCAACAATCTGGTTATGGCTATGTGCAGCCTGGATCATACTCTGGTCCATCACCCCAGTATAACATGCCTCAGGGGTACGCGGGATATCCTCCCCAGCAACCTGGGGGATATTCTGCCAATTGGGACCAGTCCACTGCACAATCTCACCAGCAGTCTACTCATGCTGGTGGTTATGATTATTACAATCAACAACCCCAGCAACAACAAAATCCTGGTGGTCCTGCACAGCCAGCTGATGGGTCTACATACAATTACAGTCAGCCACCTTCTTCAGGTTATAGCCAACCAGGACAGGGTTATGGTCAGGAAAGCTACGGTGCATATAGTGCACCACCACAATCAGGGTATGGTCAGCCACAAACATATGAGCAGCAACAAGGTTACCCAACACAAGAAGGGCACACTTCCAACTATGGATCGCAAGGAGATTCGTCCCAAACTTCCCAACCCTCTACTGTTGCCCAGCAAGGTTATGCTACCAACCAACAAGGAACTCCTCAGCCAGGTTATGGGATTCCCCCTACCTCCCAAGCGGCCTATGGAACTCAACCACAGTCTGGTTATGGACCTGGTTATGGTGCCCCTCCTGCTCAAAAGCCCAGCGGAAATCCACCTGTTTACAGTCAGTCACAGTCACCTAGTGCAGCTGGAGGATATAGTCAGTCATCATATCCCCCTACCCAGGCCGCACCTTCTGGGTATGCTCAACCAGAGTCAGCTACTCAGAGAGCACCCGCGCAACCGGGGTATGGTTCTCAATCATATAGTGCTCCTCAAGGTGGCCAGCCTGGCTATGGTCAAGCTCCACCATCATATGGCAACAGTTCTTATGGTGCTGGTTATGCTCAAGCTCCAGTGTATGCTAGTGATGGAGCAAGTGCACCGGCTGCTCAACAGAGTGGTGTTGCTAAAGCATCACCCAAAAGTTGA 1773 0.4907 MAEEAQYTLKRKYDDQPTATDIELEVANAKLRAQEVAARLLSVTSAPPLSYDAKRNKSDNGAPQSGFDSYDSKPQYSSSPYGSSKKIDIPNGRVGVLIGKSGETIKYLQLQSGAKIQITRDMDADPNSSTRMVELMGTPDAVASAEKLINEVLAEAESGGSGGGTRRMAAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASSGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKQLVNQIVSGENRLRNSASSGGYNQQGYQSRPPSSWAPPAAPVQQSGYGYVQPGSYSGPSPQYNMPQGYAGYPPQQPGGYSANWDQSTAQSHQQSTHAGGYDYYNQQPQQQQNPGGPAQPADGSTYNYSQPPSSGYSQPGQGYGQESYGAYSAPPQSGYGQPQTYEQQQGYPTQEGHTSNYGSQGDSSQTSQPSTVAQQGYATNQQGTPQPGYGIPPTSQAAYGTQPQSGYGPGYGAPPAQKPSGNPPVYSQSQSPSAAGGYSQSSYPPTQAAPSGYAQPESATQRAPAQPGYGSQSYSAPQGGQPGYGQAPPSYGNSSYGAGYAQAPVYASDGASAPAAQQSGVAKASPKS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02830 590 CDD KH-I 84 149 - -
Car05g02830 590 Pfam KH domain 86 151 IPR004088 GO:0003723
Car05g02830 590 Pfam KH domain 178 243 IPR004088 GO:0003723
Car05g02830 590 MobiDBLite consensus disorder prediction 317 465 - -
Car05g02830 590 SMART kh_6 173 247 IPR004087 GO:0003676
Car05g02830 590 SMART kh_6 81 154 IPR004087 GO:0003676
Car05g02830 590 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 85 160 IPR036612 GO:0003723
Car05g02830 590 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 47 577 - -
Car05g02830 590 Gene3D K Homology domain, type 1 77 170 IPR036612 GO:0003723
Car05g02830 590 Gene3D K Homology domain, type 1 171 271 IPR036612 GO:0003723
Car05g02830 590 MobiDBLite consensus disorder prediction 252 562 - -
Car05g02830 590 ProSiteProfiles Type-1 KH domain profile. 82 149 - -
Car05g02830 590 MobiDBLite consensus disorder prediction 286 302 - -
Car05g02830 590 MobiDBLite consensus disorder prediction 48 85 - -
Car05g02830 590 CDD KH-I 176 242 - -
Car05g02830 590 MobiDBLite consensus disorder prediction 484 542 - -
Car05g02830 590 MobiDBLite consensus disorder prediction 252 271 - -
Car05g02830 590 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 170 248 IPR036612 GO:0003723
Car05g02830 590 ProSiteProfiles Type-1 KH domain profile. 174 242 - -
Car05g02830 590 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 47 577 - -
Car05g02830 590 MobiDBLite consensus disorder prediction 57 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02830 Car-Chr5 73371034 73376042 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02830 K13210 - gmx:100813135 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02830 05 73371034 73376042 Car05g02830 05 73371034 73376042 ECH