Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02775 ATGTCGAATCGATCCAAACCTGATCCTGTCGACGATTCTGGTTCGCCCTCATCTTTTTCACCTCAATCTTATTTTCGTCGTTATTTATCGCTTAATCAAAACCAAAACCAAAACCCTTTAAACGATCATATTCGAATGTTATCTCAAATTCAAAACCCCTCTAATATGAATCAAACCCTAGAACATGCTTTTTCTCGTCTTTCTGTTTCTAATAATAACAACTCTGGTTTCACTAATAACCCTTCTTATGGTTATGATTATTCCAATCTTTATAACTATGGATTTCAAAACTCCAACTTTGGTCAAATGCAAGAAACCGCAATTGGGAATAATAGACATGTTCGGAGTAATAGCATCGCTCACAATGCAGAAATTCAGAATCTTTTGATGAGGTACGATAGAGAAAATGTCAGGAGGAGCCCACATTGGTTTGATGATTTTCGTGGGAGGGTTTATTCATTGGCTAAGGATCAACATGGAAGTAGAATTTTGCAGGAAGTGATTAAGAAATTTGGAAGTGAAGGGGTTTCTTATATTTTCTCCGAGCTTGTTAATCACGTCACTGAGCTGATGATAGATCCATTTGGTAACTATGTTGTTCAGAAGATGGTGGAAATTTGCAATGAAGATCAACAGACTCGTATTGTTCTAATGGTTACATACCATAGTTTTCAGTTGATCAGAATTTGCCTTAGTCCTCATGGATCTCGTGCTGTTGAGAAACTATTGGAGAATGTTACCACCCGGGAGCAACGAACTCTAATTATGGCAGCTTTGAGTCCTGGTGCTATTGCATTGTCTAAGGATATCAATGGTCATCGTGTGGTTCTCCATTGTTTGAAAAACTTCACACATGAAGATACTAAGCAATTCCTGAATGTGGTCGCAAGCAACTCTTTGGCGATTGCAAGAGATAAAACTGGATGCTGTGTGCTGCAGCATTGTGTTAACCATGCTCAAGGAGAAACTAGAAATCAGCTGATTGATGACATTGTACTGAATTCTTCACTATTAGCAGAAGATTGTTATGGCAACTATGTTGTTCAACATCTATTGTCTCTGAAAATGCCGCGAATCACAGACAACTTAGTCCGAGAGCTCGAACGACAATTTGTATATCTTGCCTGCAATAAGTATGGGAGTAATGTAGTGGAAAAGTTTATTCAAGACTCAGGAGAACTGCAATCTGCACGCGTCATTTTGGAGTTGCTTGCCGATCCAAATGTTGCAAGGCTCCTTGTGGATCCATATGGAAATTATGTCATCCAATCCGCACTGACGGCATCTAAGGGTCCCATTAGGAATGCCATACTGGACCTGATCCAAAGAAATTCTCAAATGATGCGCAACAATGTGTATGGCAAAAAGTTGCTTGATAGGTTTGACAAGGGAAAAGTAAGGACCTCGGTTCTGGAACAGTTTAGATTGGACTAG 1434 0.394 MSNRSKPDPVDDSGSPSSFSPQSYFRRYLSLNQNQNQNPLNDHIRMLSQIQNPSNMNQTLEHAFSRLSVSNNNNSGFTNNPSYGYDYSNLYNYGFQNSNFGQMQETAIGNNRHVRSNSIAHNAEIQNLLMRYDRENVRRSPHWFDDFRGRVYSLAKDQHGSRILQEVIKKFGSEGVSYIFSELVNHVTELMIDPFGNYVVQKMVEICNEDQQTRIVLMVTYHSFQLIRICLSPHGSRAVEKLLENVTTREQRTLIMAALSPGAIALSKDINGHRVVLHCLKNFTHEDTKQFLNVVASNSLAIARDKTGCCVLQHCVNHAQGETRNQLIDDIVLNSSLLAEDCYGNYVVQHLLSLKMPRITDNLVRELERQFVYLACNKYGSNVVEKFIQDSGELQSARVILELLADPNVARLLVDPYGNYVIQSALTASKGPIRNAILDLIQRNSQMMRNNVYGKKLLDRFDKGKVRTSVLEQFRLD 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 293 329 IPR001313 GO:0003723
Car05g02775 477 CDD Pumilio 145 458 IPR033712 GO:0003723
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 146 181 IPR001313 GO:0003723
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 220 256 IPR001313 GO:0003723
Car05g02775 477 PANTHER PUMILIO HOMOLOG 15 37 460 - -
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 366 401 IPR001313 GO:0003723
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 402 439 IPR001313 GO:0003723
Car05g02775 477 Gene3D - 128 470 IPR011989 -
Car05g02775 477 SUPERFAMILY ARM repeat 143 461 IPR016024 -
Car05g02775 477 SMART pum_5 146 181 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 294 329 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 258 293 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 366 401 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 182 217 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 330 365 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 221 257 IPR001313 GO:0003723
Car05g02775 477 SMART pum_5 404 439 IPR001313 GO:0003723
Car05g02775 477 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 124 465 IPR033133 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 300 331 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 150 183 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 227 259 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 186 216 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 408 441 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 338 352 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 370 404 IPR001313 GO:0003723
Car05g02775 477 Pfam Pumilio-family RNA binding repeat 265 294 IPR001313 GO:0003723
Car05g02775 477 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 37 460 - -
Car05g02775 477 MobiDBLite consensus disorder prediction 1 22 - -
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 330 365 IPR001313 GO:0003723
Car05g02775 477 ProSiteProfiles Pumilio RNA-binding repeat profile. 182 217 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02775 Car-Chr5 72867336 72871352 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02775 - - mtr:MTR_3g102650 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02775 05 72867336 72871352 Car05g02775 05 72867336 72871352 ECH