Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02746 ATGACGGTTGCCTCCACAACGGTTTCTTGCTTCAGAAGCAGACCCAATCTGTCTCTGTTTCACTCTCTCTTTCATTGTGGGAAGTCTTCTGCACTTGTTATCTTTCGCCAACTTTTAGAAGCAAATGTGAACCCCAATGCTTTTACTTTTTCGTTACTCATCAAAGCTTGTCTTTCATCGTCTTCTTTTGCTTATGCTTCATTAAATTTGGGGTTACAAGCACGCCAGATTCAAACCCAATTGCTGAAACGAGGCGTTAACCAATTTATTCATGTAAATACTTCTCTTATTGATTTGTACATGAAACTTGGTTTTACTTCTCATGCACACCACCTGTTTGAAGAAATGGTTTTTAGAGATGTTGTTTCATGGAACGTATTGATTTGTGGATATTCACAAAATGGATATCTTTATGATGCTCTTAAATTTTTTGTAGGCGTGTTAAGAGAGAATTTTAGGCCTAATCAAACTACAATTATTAGTTTGTTACCTTCTTGTGGTTGTCATGAGCTGATTCTTCAAGGTAGATCCATTCATGGGTTTGGAATCAAAGCTGGCCTTGGTCTGGATTCTCAGTTGAATAATGCCCTTATCTCAATGTATTCTAAATGTGATGATTTGAAAGCATCCCAACTCttgtttgatgaaatggatgagaagaatgttgtctcttggaatactatgattggtgcctatggtCAAAGTGGCTTTTATGATAAGGCTATTATTTGCTTCAAAGACATGCTGAAGGCAGGTTTTCGACCCAGTTCGGTGACGATGATGAACCTTATGTCTGCTAATGCTGTTCCGGAAACTGTCCATTGCTATGTTATCAAATGTGGCTTTACCGATGATGCTTCTGTCGTTACTTCGCTGGTTTGTTTATACGCAAAGCAAGGGTTAACAGATATGGCAAAACTGCTTTACATACACTATCCCACAAAAGACCTGATTTCTTTAACAGCGATAATCTCTAGCTATTCTGAAAAAGGCGATATAGAGTCTGCAGTTGAATGTTTTATCAAAACTATGCAGTTAGATATAAAACCAGATGCAGTTGCCTTGATTGGTGTCCTTCATGGAATTACTATTCCTTCACATGTTGCTCTTGGATGCGCTTTCCACGGTTATGCGGTGAAGAGTGGGCTGTCCAATGATTGTTTAGTTGCTAATGGGCTAATAAGCTTGTATTCTAGATTTGATGAGATAGAAGCCGCATTGTCTTTGTTTTATGATATAAGAGATAAACCACTGATCACTTGGAATTCGGCGATATCCGGCTGTGTGCAGGCTGGAAGGTCAAGTGATGCCCTGGAGTTGTTCTCCAAAATGAACATGTGCGGACAAAAACCAGATGCCATTACTATTGCCAGTCTTCTATCCGGGTGTTGCCAGCTTGGTTACCTGCGGATTGGAGAGATGCTGCATAATTATATTCTGAGGAACAATGTGAAAGTGGAGGATTTTACAGGAACTGCTCTAATAGATATGTATAGCAAGTGTGGAAAATTAGACTACGCTGAAAAGCTATTTTATAGCATCAAGGATCCATGTTTGGCAACATGGAATTCCATTATATCAGGTTATAGTTTATATGGACTTGAACATAAAGCTTTCAGCTGTTATTCTAAACTGCAAGAGCAAGGGTTAAAACCGGATAAAATCACCTTCTTGGGAGTTTTAGCAGCATGCTACCATGGAGGACTTGTCTGTTTGGGATTGAAATACTTCACTAACATGATAGAGGAATATGGTTTGATGCCAACTTTGCAACATTATGCTTGCCTAGTTGGTCTATTAGGTAGAGAAGGCTTGTTCAAGGAAGCAATTGAATTTATAAACTACATGGAAATTCGACCTGATTCTGCTGTTTGGGGAGCTTTGTTAAGTGCTTGTTGCATCCAACAAGAAGTGAAGCTTGGGGAATGCTTGGCGAAAAAATTGTTTTTGTTGAATCACAAAAATGGTGGGTTTTATGTATTAATGTCAAATCTTTATGCCATTGTTGGGAGATGGGATGATGTAGCAAGGGTGAGGGAAATGATGAGAGATGGTGGAGGAGATGGATGTTCAGGTGTTAGTGTTATTGAAGTGGCATATATTAATGACTCTAATAACAACTTAGATATGAAGTTTGTCCATTCATTATCAGAATAG 2157 0.3764 MTVASTTVSCFRSRPNLSLFHSLFHCGKSSALVIFRQLLEANVNPNAFTFSLLIKACLSSSSFAYASLNLGLQARQIQTQLLKRGVNQFIHVNTSLIDLYMKLGFTSHAHHLFEEMVFRDVVSWNVLICGYSQNGYLYDALKFFVGVLRENFRPNQTTIISLLPSCGCHELILQGRSIHGFGIKAGLGLDSQLNNALISMYSKCDDLKASQLLFDEMDEKNVVSWNTMIGAYGQSGFYDKAIICFKDMLKAGFRPSSVTMMNLMSANAVPETVHCYVIKCGFTDDASVVTSLVCLYAKQGLTDMAKLLYIHYPTKDLISLTAIISSYSEKGDIESAVECFIKTMQLDIKPDAVALIGVLHGITIPSHVALGCAFHGYAVKSGLSNDCLVANGLISLYSRFDEIEAALSLFYDIRDKPLITWNSAISGCVQAGRSSDALELFSKMNMCGQKPDAITIASLLSGCCQLGYLRIGEMLHNYILRNNVKVEDFTGTALIDMYSKCGKLDYAEKLFYSIKDPCLATWNSIISGYSLYGLEHKAFSCYSKLQEQGLKPDKITFLGVLAACYHGGLVCLGLKYFTNMIEEYGLMPTLQHYACLVGLLGREGLFKEAIEFINYMEIRPDSAVWGALLSACCIQQEVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDVARVREMMRDGGGDGCSGVSVIEVAYINDSNNNLDMKFVHSLSE 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02746 718 Pfam PPR repeat 593 617 IPR002885 -
Car05g02746 718 Pfam PPR repeat 521 550 IPR002885 -
Car05g02746 718 Pfam PPR repeat 319 342 IPR002885 -
Car05g02746 718 Pfam PPR repeat 391 416 IPR002885 -
Car05g02746 718 Pfam PPR repeat 94 119 IPR002885 -
Car05g02746 718 Pfam PPR repeat 122 146 IPR002885 -
Car05g02746 718 Pfam PPR repeat 492 515 IPR002885 -
Car05g02746 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Car05g02746 718 Gene3D Tetratricopeptide repeat domain 276 366 IPR011990 GO:0005515
Car05g02746 718 Gene3D Tetratricopeptide repeat domain 181 275 IPR011990 GO:0005515
Car05g02746 718 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 213 309 - -
Car05g02746 718 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 52 219 - -
Car05g02746 718 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 311 711 - -
Car05g02746 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 350 IPR002885 -
Car05g02746 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 518 552 IPR002885 -
Car05g02746 718 PANTHER OS07G0578800 PROTEIN-RELATED 52 219 IPR045215 GO:0003723|GO:0009451
Car05g02746 718 PANTHER OS07G0578800 PROTEIN-RELATED 213 309 IPR045215 GO:0003723|GO:0009451
Car05g02746 718 PANTHER OS07G0578800 PROTEIN-RELATED 311 711 IPR045215 GO:0003723|GO:0009451
Car05g02746 718 Pfam PPR repeat family 419 465 IPR002885 -
Car05g02746 718 Pfam PPR repeat family 220 265 IPR002885 -
Car05g02746 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Car05g02746 718 Gene3D Tetratricopeptide repeat domain 22 176 IPR011990 GO:0005515
Car05g02746 718 Gene3D Tetratricopeptide repeat domain 516 715 IPR011990 GO:0005515
Car05g02746 718 Gene3D Tetratricopeptide repeat domain 367 479 IPR011990 GO:0005515
Car05g02746 718 TIGRFAM PPR: pentatricopeptide repeat domain 521 553 IPR002885 -
Car05g02746 718 TIGRFAM PPR: pentatricopeptide repeat domain 122 155 IPR002885 -
Car05g02746 718 TIGRFAM PPR: pentatricopeptide repeat domain 419 453 IPR002885 -
Car05g02746 718 TIGRFAM PPR: pentatricopeptide repeat domain 223 256 IPR002885 -
Car05g02746 718 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Car05g02746 718 Pfam E motif 637 697 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02746 Car-Chr5 72528832 72530988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02746 46 704 Glycoside Hydrolase AT3G49170 31.278 1.16e-104 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02746 - - gmx:100787089 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02746 05 72528832 72530988 Car05g02746 05 72528832 72530988 ECH