Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02705 ATGAAAATCTCAGCTATTCAACGCTGCAGACACAAGTCAAATAATTCTGCAACTACATCTTCACTCCCATGGATATCACCTCTTAATTTTTCAAAACCTAAACTAGACCCACCCCCTGAAATCACTCTCCCTTCTAATGAAACCAGGAGGAAAAACAAATATATCACTCACGACGTTGCTATCAATTTGATCAAAAGAGAGAAAGATCCGCAACACGCCTTGAAAATATTTAACATGGTATCTGAACAAAAGGGTTTTAATCACAACAATGCTACCTATGCATCCATTCTCCATAAACTTGCTCAGTTTAAGAAGTTTCAAGCTGTTGATCGAGTTCTTCATCAAATGACCTATGAAACTTGTCAATTTCATGAGGGTATATTTATCAACCTCATGAAGCATTACTCAAAATGCTCTTTTCATGAAAAAGTACTTGATGCTTTTTTCTCTATTCAGCCAATTGTTCGTGAAAAACCCTCTCCTAAAGCTATCAGCACTTGTCTTAATCTCTTGGTTGATTCCAATCAGGTTGATTTGGCGCGGCAGTTGCTCTTGCATGCTAAGAGGAGTCTAATTTATAAGCCAAACGTTTGCATTTTCAATATTTTGGTGAAATACCATTGCAGAAATGGAGATATTGAATCGGCTTTTGAAGTTGTCGAAGAAATGAGGAAATCCAAGTATTCATATCCTAATGTAATTACCTACTCAACCATGATGGATGGCCTTTGTCGAAATGGACGACTCAAAGAAGCTTTTGAACTTTTCGAGGAAATGGTCTCAAAGGATCGGATTGTACCTGATCCTCTTACTTACAATGTTCTGATCAATGGCTTTTGTCGTGGAGGGAAACCTGATCGCGCTAGAAATGTAATTGAGTTTATGAAAAGTAATGGATGTTGTCCTAATGTATTCAATTACTCAGCCTTGGTGGATGGATTATGTAAAGTGGGGAAATTGCAGGATGCAAAGGGGGTTTTCGCCGAAATGAAGAGTTCTGGTCTGAAACCTGATACTGTTACATACACTTCGTTGATAAATTTCTTTTGTAGGAATAGGAAAATTGATGAAGCTATAGAGTTACTTAAAGAAATGAAGGAAAATGAATGCCAGGCTGATACTGTTGCATTCAATGTGATACTTGGAGGTATGTGCAGAGAAGGTAGATTTGAGGAGGCTCTTGATATGATTGAGAAACTTCCACAACAGGGTGTTTATTTGAACAAAGGTAGTTATAGGATTGTCCTAAATTCCTTAACCCAAAAATGTGAGTTGAGGAAGGCAAAGAAATTATTAGAACTAATGCTAAGTAGGGGGTTTCTACCCCATTATGCTACCTCAAATGAATTATTGATTAGTTTTTGTAAGGAAGGGATGGTTGATGATGCCGCTGCCGCGCTATTTGACTTGGTGGAGATGGGGTTCCAGCCGCCACTTGATTGTTGGGAACTTTTAATCGAATTAATATGCAGAGACAGAAAGTTATTGTATGTTTTTGAGCTACTTGATGAATTAGTGACAGCAAATTCTTGA 1533 0.3777 MKISAIQRCRHKSNNSATTSSLPWISPLNFSKPKLDPPPEITLPSNETRRKNKYITHDVAINLIKREKDPQHALKIFNMVSEQKGFNHNNATYASILHKLAQFKKFQAVDRVLHQMTYETCQFHEGIFINLMKHYSKCSFHEKVLDAFFSIQPIVREKPSPKAISTCLNLLVDSNQVDLARQLLLHAKRSLIYKPNVCIFNILVKYHCRNGDIESAFEVVEEMRKSKYSYPNVITYSTMMDGLCRNGRLKEAFELFEEMVSKDRIVPDPLTYNVLINGFCRGGKPDRARNVIEFMKSNGCCPNVFNYSALVDGLCKVGKLQDAKGVFAEMKSSGLKPDTVTYTSLINFFCRNRKIDEAIELLKEMKENECQADTVAFNVILGGMCREGRFEEALDMIEKLPQQGVYLNKGSYRIVLNSLTQKCELRKAKKLLELMLSRGFLPHYATSNELLISFCKEGMVDDAAAALFDLVEMGFQPPLDCWELLIELICRDRKLLYVFELLDELVTANS 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 375 408 IPR002885 -
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 199 232 IPR002885 -
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 307 339 IPR002885 -
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 411 442 IPR002885 -
Car05g02705 510 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Car05g02705 510 MobiDBLite consensus disorder prediction 1 20 - -
Car05g02705 510 Pfam PPR repeat 194 224 IPR002885 -
Car05g02705 510 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 19 508 - -
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Car05g02705 510 SUPERFAMILY TPR-like 90 268 IPR011990 GO:0005515
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Car05g02705 510 Pfam PPR repeat 448 475 IPR002885 -
Car05g02705 510 SUPERFAMILY HCP-like 206 442 - -
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Car05g02705 510 Gene3D Tetratricopeptide repeat domain 421 510 IPR011990 GO:0005515
Car05g02705 510 Gene3D Tetratricopeptide repeat domain 42 154 IPR011990 GO:0005515
Car05g02705 510 Gene3D Tetratricopeptide repeat domain 155 284 IPR011990 GO:0005515
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
Car05g02705 510 Pfam PPR repeat family 302 351 IPR002885 -
Car05g02705 510 Pfam PPR repeat family 373 419 IPR002885 -
Car05g02705 510 Pfam PPR repeat family 231 281 IPR002885 -
Car05g02705 510 Gene3D Tetratricopeptide repeat domain 285 420 IPR011990 GO:0005515
Car05g02705 510 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 19 508 - -
Car05g02705 510 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02705 232 509 Glycosyltransferase AT1G05670 29.137 1.11e-39 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02705 - - mtr:MTR_3g100600 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02705 05 72153889 72155421 Car05g02705 05 72153889 72155421 ECH