Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02643 ATGGccgccaccaccaccaccaccCCTTCCAGATCCGCTTTCTCTTCTTCTTCACATCCTATCTTCCCAAAAAGCAACACCAAACTAACATTCTCTCTCTCTCCCATTTTCAACAAACCAAAACTCATTAGTTCTCGTCCCTTCAAAATCTCATCCTCCCTCTCAAAATcccccaccgcaccatcctccataacaacaacaacaacaaccaccaccacctccacTTTCATATCTCGCTTCTCACCCACCGAACCGCGTAAAGGCTCCGACATTCTTGTCGAAGCTTTAGAACGCGAAGGCGTAACCAACGTCTTCGCTTACCCCGGTGGAGCTTCCATGGAGATCCACCAAGCCCTAACCCGTTCCAAAATAATCCGAAACGTCCTTCCCCGTCACGAACAAGGCGGTATATTCGCCGCCGAAGGCTACGCGCGTTCCTCCGGTCTTCCTGGCGTTTGTATTGCCACCTCCGGTCCCGGTGCCACCAACTTAGTTAGCGGTCTCGCCAATGCTTTGATGGATAGTATTCCAATAATCGCTATCACCGGTCAAGTTCCCCGGAGAATGATCGGAACCGATGCTTTTCAAGAAACCCCCATCGTTGAAGTAACGAGATCCATCACAAAGCATAACTACCTCATTCTTGAGGTTGATGATATTCCTAGGGTTGTTAGAGAGGCTTTTTTCGTTGCTAATTCTGGTAGGCCTGGCCCAGTTCTCATTGACGTACCCAAAGACGTTCAACAACAACTCGCTGTTCCGAATTGGGCCCAGCCCATTAAACTAACTGGATATCTCTCCAGGCTTCCCAAGATTCCTATTGAGGCCCAATTAGAACAAGTTGTTCGGTTATTATTAGAATCTAAAAAACCTGTTTTATATGTTGGAGGTGGTTGTTTGAATTCAAGTGAGGAGTTAAAACGGTTTGTTGAAATTACCGGTATTCCTGTTGCTAGTACTTTAATGGGACTAGGTAGTTACCCTGTTGGAGGAGAACATTCCCTTCAAATGTTGGGTATGCACGGTACTGTTTATGCTAATTATGCTGTTGATAAAAGTGATTTATTGCTTGCTTTTGGGGTTAGGTTTGATGATCGTGTAACTGGGAAATTAGAAACTTTTGCTAGTAGGGCTAATATTGTTCATATAGATATTGATTCGGCTGAAATTGGGAAGAATAAGCTTCCACAAGTGTCTGTTTGTGCTGACATGAAGTTTGCGTTACAAGGTCTTAATAGGATTTTGGAGAGTAAAGGGATTAAAGATAAACTTGATTTTGAATCATGGAGAGAGGAATTGAATGTTGTGAAAATTAAATTTCCTCTTGGGTTTAAGACGTTTGAGGATGCGATTTCACCTCAGTATGCCATCCAGGTGCTCGATGAATTGACAAATGGTGATGCTATTGTTAGTACTGGTGTTGGACAGCATCAAATGTGGGCTGCTCAGTTTTATAAGTATAAGAGACCTAGACAATGGTTAACTTCGGGTGGACTTGGTGCTATGGGTTTTGGATTGCCTGCTGCGATGGGCGCtgctgttgctaaccctgatgctgttgttgttgATATCGATGGGGATGGTAGTTTTATGATGAATGTACAAGAGTTAGCTACTATAAAAGTGGAGAAACTCCCTGTTAAGATTTTGTTGTTGAATAATCAGCACTTGGGTATGGTTGTTCAGTGGGAGGATAGATTCTACAAGTCGAATAGAGCTCATACTTATCTTGGTGACCCTTCTAGGGAGAATGAAATTTTCCCTAACATGCTTGGATTTGCAGATGCTTGTGGGATACCAGCAGCTCGTGTGACGAAGAAGGAAGAGCTTAGAGATGCTATTCAGAAAATGTTGGATACTCCTGGTCCTTATCTTCTAGATGTTATTGTACCTCATCAAGAGCATGTTTTGCCAATGATTCCTAGTAATGGTTCCTTCAAGGATGTGATCACTGACGGTGATGGAAGAAGGAGTTACTGA 1980 0.4066 MAATTTTTPSRSAFSSSSHPIFPKSNTKLTFSLSPIFNKPKLISSRPFKISSSLSKSPTAPSSITTTTTTTTTSTFISRFSPTEPRKGSDILVEALEREGVTNVFAYPGGASMEIHQALTRSKIIRNVLPRHEQGGIFAAEGYARSSGLPGVCIATSGPGATNLVSGLANALMDSIPIIAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLILEVDDIPRVVREAFFVANSGRPGPVLIDVPKDVQQQLAVPNWAQPIKLTGYLSRLPKIPIEAQLEQVVRLLLESKKPVLYVGGGCLNSSEELKRFVEITGIPVASTLMGLGSYPVGGEHSLQMLGMHGTVYANYAVDKSDLLLAFGVRFDDRVTGKLETFASRANIVHIDIDSAEIGKNKLPQVSVCADMKFALQGLNRILESKGIKDKLDFESWREELNVVKIKFPLGFKTFEDAISPQYAIQVLDELTNGDAIVSTGVGQHQMWAAQFYKYKRPRQWLTSGGLGAMGFGLPAAMGAAVANPDAVVVDIDGDGSFMMNVQELATIKVEKLPVKILLLNNQHLGMVVQWEDRFYKSNRAHTYLGDPSRENEIFPNMLGFADACGIPAARVTKKEELRDAIQKMLDTPGPYLLDVIVPHQEHVLPMIPSNGSFKDVITDGDGRRSY 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02643 659 Gene3D - 278 442 - -
Car05g02643 659 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 81 262 IPR029061 -
Car05g02643 659 MobiDBLite consensus disorder prediction 51 72 - -
Car05g02643 659 ProSitePatterns Thiamine pyrophosphate enzymes signature. 510 529 IPR000399 GO:0000287|GO:0030976
Car05g02643 659 CDD TPP_AHAS 451 642 IPR039368 GO:0030976
Car05g02643 659 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 450 652 IPR029061 -
Car05g02643 659 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 53 658 IPR045229 -
Car05g02643 659 Pfam Thiamine pyrophosphate enzyme, central domain 279 411 IPR012000 GO:0000287|GO:0030976
Car05g02643 659 Gene3D - 75 269 - -
Car05g02643 659 SUPERFAMILY DHS-like NAD/FAD-binding domain 276 441 IPR029035 -
Car05g02643 659 PANTHER ACETOLACTATE SYNTHASE 53 658 - -
Car05g02643 659 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 87 250 IPR012001 GO:0030976
Car05g02643 659 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 87 650 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Car05g02643 659 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 473 628 IPR011766 GO:0003824|GO:0030976
Car05g02643 659 CDD TPP_PYR_POX_like 90 245 - -
Car05g02643 659 Gene3D - 443 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02643 Car-Chr5 71430973 71433362 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02643 K01652 - gmx:100798203 1039.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02643 05 71430973 71433362 Car05g02643 05 71430973 71433362 ECH