Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02627 atgaagaggaagagagaagagaaggagTGTATGGATATCGTGTGGCAAACCCCAGCAAATCCCCCGCTACCGCAAGACTACATCTTCCGAAACGGAACTCGATACGTTAGACCATACTACTTCGAATTTATCGCTCATGTAAAAAACCGTTGGGCGGGGAAAACTATTGTTGATTTGTTCGCTGAGGAGTTTAAAGGTCGACCTTATGAATATTATGTTAGTGCTGTAAAATGTGGAAGGATTCAAGTTGATGGTGAAATGGTTCCGGTTTCATACTTAGTTAAATCATCTCAAAAGATTAGCCATTTTTTACACAGGCATGAACCACCTGTAATGGCTTGTGATGTTCCTATTCTTCATAAAGAACCAGATGTGCTAACTATTTGTAAGCCGGCATCTGTCCCTGTTCATCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATCCTTCAAGCAGAGCATGGGCTGGCACCTCTGTTTCCTGTTCATCGACTGGATCGCCTTGTTTCTGGACTTCTTATTTTGGCCAGAAATGGAACAAAAGCTGATATCTTTAGGCAACAGATTGAAGCTGGTTTAGTCAAGAAACAGTATATAGCAAAAGTAGTTGGAGAATTTCCCAAGGATGAGCTAATTGTTGATGCCAATATAGACTATAATCCTCGAGAAGGAAGGAGCACAGCAGAGGTCAGGGACTCTGCCAAGGGGAAGGTTGCCTCTACAAAATTTACTCGGATTATTTCCAACGGTACTCATAGTATTGTTTCATGTGAACCTGTTACTGGCCGCACTCATCAGATACGTGTTCATTTACAGTATTCTGGACACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTGTTGACCGATCTATTAATGGGTCAACGGCTGATAGATCAGCTCGCATAGCTGATGCTTCCCTGACATCAAATTTTAGTGAAGAAGTACCTAATGATTGTCAAGAAAATTCCAATGGTGATTTTGGCTTTGATCCCATGTGCACAAACTGTCCAAATTTGGCTCCCAAAGGATATGATGGCAATGAAGAAGGTTTGTGGTTACATTGTTTCCGTTACTCTGGACCTGGATGGACGTATGAATGCCCATATCCTGATTGGGCGAAACTTTAG 1140 0.4105 MKRKREEKECMDIVWQTPANPPLPQDYIFRNGTRYVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYLVKSSQKISHFLHRHEPPVMACDVPILHKEPDVLTICKPASVPVHPCGQYRKNTVVGILQAEHGLAPLFPVHRLDRLVSGLLILARNGTKADIFRQQIEAGLVKKQYIAKVVGEFPKDELIVDANIDYNPREGRSTAEVRDSAKGKVASTKFTRIISNGTHSIVSCEPVTGRTHQIRVHLQYSGHPIANDMLYISEQTVDRSINGSTADRSARIADASLTSNFSEEVPNDCQENSNGDFGFDPMCTNCPNLAPKGYDGNEEGLWLHCFRYSGPGWTYECPYPDWAKL 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02627 379 CDD PseudoU_synth_ScRIB2 101 378 - -
Car05g02627 379 TIGRFAM rluA_subfam: pseudouridine synthase, RluA family 50 298 IPR006225 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g02627 379 Pfam RNA pseudouridylate synthase 125 273 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g02627 379 SUPERFAMILY Pseudouridine synthase 108 377 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g02627 379 ProSitePatterns Rlu family of pseudouridine synthase signature. 163 177 IPR006224 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Car05g02627 379 Gene3D Pseudouridine synthase 109 362 - -
Car05g02627 379 PANTHER PSEUDOURIDINE SYNTHASE 11 379 - -
Car05g02627 379 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 11 379 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02627 K15454 - gmx:100811500 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02627 05 71300571 71305685 Car05g02627 05 71300571 71305685 ECH