LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02598	ATGGTTACTTCAATGGATATTGGTGTATGGATTTTACTCTTCTTGGTTGGGTTTATCCATTCATCGGAATCCAAATACATTGCATACAACACTACCTCAACCATTGTTCCTGGGAAGCTCAATGTTCACTTGGTCCCTCACACTCACGACGATGTTGGATGGTTGAAAACCATAGACCAGTACTATGTTGGTTCCAACAACTCCATTCAGGGAGCTTGTGTTCAAAATGTGCTAGATTCACTTATACCGGCCTTGTTGGCAGACAAGAATCGCAAGTTCATTTATGTTGAACAGGCATTCTTCCAGCGTTGGTGGAGAGAGCAGAGTGAGGTTGTCCAGAAAACAGTCAAGCAGCTGGTCAACTCTGGTCAATTGGAGTTCATAAATGGTGGTATGTGTATGCATGATGAGGCTGCTACACATTACATCGACATGATTGATCAGACAACCCTTGGACATCGATTCATCAAAGAAGAATTTGGTGTAACTCCAAGAATAGGATGGCAAATCGACCCATTTGGACATTCTGCAGTGCAGGCCTACTTGTTGGGAGCAGAGGTTGGATTTGATTCTTTATTCTTTGCACGGATTGACTATCAAGATAGAGCTAAGAGAAAAGATGAAAAAAGTCTTGAAGTTGTGTGGCAGGGTTCTAAGAGCTTTGGTTCATCTTCACAGATATTTTCCGGTGCATTCCCTGAGAATTATGAACCTCCCAGTAATTTCTACTTTGAAGTAAACGACGATTCTCCAATAGTTCAGGACGATATAAATTTGTTTGACTACAATGTTCCTGAACGAGTAAATGAGTTTGTCTCAGCGGCATTGTCACAGGCCAATATAACGCGCACAAATCATATAATGTGGACAATGGGGACAGATTTCAAGTACCAATATGCAGAGACCTGGTTTAGGCAACTGGACAAATTTATTCACTATGTTAATCAGGATGGACGGGTTCATGCCTTATACTCAACACCATCAATATATACTGATGCAAAACATGCTGCAAATGAAGCCTGGCCAATCAAGACCGATGACTACTTTCCGTATGCTGATCGGGTAAATGGCTACTGGACGGGGTATTTTACAAGTAGGCCTGCCCTCAAAGGTTATGTCAGATGGACGAGTGGCTACTACTTGGCAGCAAGGCAGTTGGAGTATTTCAAAGGGAAGAGTGCTTCAGGTCCTAATACCGACTCTTTGGCTGATGCTTTGGCTATTGCTCAGCACCATGATGCGGTATCTGGTACATCAAAGCAGCATGTAGCTAATGATTATGCGAAACGGCTTTCAATAGGTTACACAGAGGCCGAGAAAACTGTTGCAGCATCACTCGCTTGCTTGACAGAGGGAGCAACCAAAACCGGCTGTGGAACTCCACAAGTTAAATTTCAACAGTGTCCACTTCTTAACATAAGTTACTGTCCTGCATCAGAAGTTAACTTCTCGGATGGGAAAAATCTGGTTGTCGTTGTTTACAACCCTCTCGGATGGAAAAGAGAGGATGTTATTAGGATTCCAGTTGCCAATGAAAAGGTTGTTGTTCGGGATTCTAACGGGAAAAAGGTCCAATCCCAGCTGCTGCCAATACCTGATGCTTTTCTTGGTTTAAGAAACTACCATGCTGCAGCATACCTAGGAATATCTCCAAGTGTAAACCCTAAATATTGGCTTGCATTTTCAGCTATTGTTCCCCCACTTGGTTTTAGCACTTACTATGTATCCAATGCCAAAAAATCAGCTAATATTTCAGATAGACATATAGCATACAAGTCAGGGAGTCAGAGTGATGGGTTTGAAGTGGGCCTAGGAAACTTGAAACTTATTTACTCTGGGAAGGAAGGGAAACTTACTCAATATATCAATAGAAAAAGAAAGGTCAAAGAATCTCTAGAGCAGACATACAAGTACTATCCCTCATATGGAGATGATGGAACAATAACTGCTCAGGCGTCCGGAGCATATATTTTTCGCCCCAATGGTTCATCATTTCCCATCAAACCCAACGGAAAGTCTCCTCTCACAGTTTTGCGGGGACCAATTGTGCATGAAGTGCATCAGAAGATCAATTCATGGATATACCAGACTACCAGACTGGTCAAAGGAAAAGAACATGTTGAAGTTGAATTTATTGTTGGACCTATACCTATTGACGATGGAGTTGGCAAAGAAATTGCAACTGAGATTAAAACAAATCTAACAAGCAGCAAAACCTTCTATACTGATTCTAATGGACGCGATTTCATTGAACGGGTTCGAGACTATAGAAAAGACTGGAACTTGGAAGTAAATCAACCTGTTGCTGGAAATTATTACCCTATCAACCATGGGATTTACCTGAAAGATAAAAGCAAAGAGTTTTCTGTATTGGTAGATAGGTCTGTGGGCGGTTCGAGCATCCTAGATGGCCAAGTGGAGCTAATGGTTCATAGGAGGTTACTTAATGATGATTCCAGAGGTGTTGCAGAGGCACTAAATGAAACAGTTTGCGTCTCTGATAAGTGCACAGGATTAACAGTTTTAGGGAAGTACTACTTCAGAATCGATCCTATAGGAGAGGGTGCTAGATGGCGTCGAACATTTGGTCAAGAGATATACTCACCGCTTCTTTTAGCCTTCACAGAGAGTGAAGGTAACTGGGGAGATTCTCATGTCACAACGTTCTCGGGAATAGATTCCTCTTACAGTTTACCAGAAAATGTTGCCGTAATAACACTCCAGGATCTTGGTGATGGAAATGTTCTCCTTCGGTTGGCGCACTTATATGAGATTGGTGAGGACATACATCTATCAATTAAGTCAAGTATAGAACTTAAAAAGGTGTTCCGCGATAAACAGATAAACAAAATAACTGAGGTGAACTTATCAGCTAACCAAGAAAGAGCAGAAATGGAGAAGAAGAGATTAGTGTGGCAAGTTAAAGGGTCGTCTCGAGAACCTGAGGTGTCAAGGGGAGGACCAGTTGATCCAGAAAAGCTAATTGTAGAACTTTCTCCCATGGAAATAAGGACCTTCGTTATCAATTTTAATCACTAA	3039	0.4176	MVTSMDIGVWILLFLVGFIHSSESKYIAYNTTSTIVPGKLNVHLVPHTHDDVGWLKTIDQYYVGSNNSIQGACVQNVLDSLIPALLADKNRKFIYVEQAFFQRWWREQSEVVQKTVKQLVNSGQLEFINGGMCMHDEAATHYIDMIDQTTLGHRFIKEEFGVTPRIGWQIDPFGHSAVQAYLLGAEVGFDSLFFARIDYQDRAKRKDEKSLEVVWQGSKSFGSSSQIFSGAFPENYEPPSNFYFEVNDDSPIVQDDINLFDYNVPERVNEFVSAALSQANITRTNHIMWTMGTDFKYQYAETWFRQLDKFIHYVNQDGRVHALYSTPSIYTDAKHAANEAWPIKTDDYFPYADRVNGYWTGYFTSRPALKGYVRWTSGYYLAARQLEYFKGKSASGPNTDSLADALAIAQHHDAVSGTSKQHVANDYAKRLSIGYTEAEKTVAASLACLTEGATKTGCGTPQVKFQQCPLLNISYCPASEVNFSDGKNLVVVVYNPLGWKREDVIRIPVANEKVVVRDSNGKKVQSQLLPIPDAFLGLRNYHAAAYLGISPSVNPKYWLAFSAIVPPLGFSTYYVSNAKKSANISDRHIAYKSGSQSDGFEVGLGNLKLIYSGKEGKLTQYINRKRKVKESLEQTYKYYPSYGDDGTITAQASGAYIFRPNGSSFPIKPNGKSPLTVLRGPIVHEVHQKINSWIYQTTRLVKGKEHVEVEFIVGPIPIDDGVGKEIATEIKTNLTSSKTFYTDSNGRDFIERVRDYRKDWNLEVNQPVAGNYYPINHGIYLKDKSKEFSVLVDRSVGGSSILDGQVELMVHRRLLNDDSRGVAEALNETVCVSDKCTGLTVLGKYYFRIDPIGEGARWRRTFGQEIYSPLLLAFTESEGNWGDSHVTTFSGIDSSYSLPENVAVITLQDLGDGNVLLRLAHLYEIGEDIHLSIKSSIELKKVFRDKQINKITEVNLSANQERAEMEKKRLVWQVKGSSREPEVSRGGPVDPEKLIVELSPMEIRTFVINFNH	1012

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02598	1012	Gene3D	Glycoside hydrolase family 38, central domain	321	399	IPR037094	GO:0004559\|GO:0006013
	Car05g02598	1012	Gene3D	Glycoside hydrolase 38, N terminal domain	40	320	IPR027291	-
	Car05g02598	1012	Pfam	Glycosyl hydrolases family 38 N-terminal domain	41	352	IPR000602	GO:0004559\|GO:0006013
	Car05g02598	1012	PANTHER	ALPHA-MANNOSIDASE	18	1011	-	-
	Car05g02598	1012	Gene3D	-	886	1012	-	-
	Car05g02598	1012	SUPERFAMILY	Families 57/38 glycoside transferase middle domain	356	450	IPR028995	-
	Car05g02598	1012	Gene3D	-	477	596	IPR013780	-
	Car05g02598	1012	Gene3D	-	600	868	-	-
	Car05g02598	1012	SUPERFAMILY	Galactose mutarotase-like	463	1010	IPR011013	GO:0003824\|GO:0005975\|GO:0030246
	Car05g02598	1012	Pfam	Alpha mannosidase middle domain	358	449	IPR015341	GO:0004559\|GO:0006013
	Car05g02598	1012	Pfam	Glycosyl hydrolases family 38 C-terminal domain	605	820	IPR011682	GO:0004559\|GO:0006013
	Car05g02598	1012	Coils	Coil	948	968	-	-
	Car05g02598	1012	Pfam	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	901	1006	IPR041147	-
	Car05g02598	1012	SUPERFAMILY	Glycoside hydrolase/deacetylase	29	353	IPR011330	GO:0005975
	Car05g02598	1012	PANTHER	ALPHA-MANNOSIDASE	18	1011	-	-
	Car05g02598	1012	CDD	GH38N_AMII_LAM_like	40	316	-	-
	Car05g02598	1012	Gene3D	Glycoside hydrolase family 38, central domain	400	455	IPR037094	GO:0004559\|GO:0006013
	Car05g02598	1012	SMART	Alpha_mann_mid_2	357	431	IPR015341	GO:0004559\|GO:0006013

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02598	Car-Chr5	71008411	71017328	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car05g02598	5	924	Glycoside Hydrolase	AT5G13980	70.398	0.0	1365

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02598	K01191		-	gmx:100798150	1790.01

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02598	05	71008411	71017328	Car05g02598	05	71008411	71017328	ECH