Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02551 ATGTTCATGGCTACACAAAATTATTCAAAATGTGTCATATTTGTGACACTACTAATAACAATTCTTTTTGTCACTCCAATATCCTCAACATCAAGAAAATCTCTCAATTCTCACCACAATATTTTTCAAGGTGGGTTCCGAGTCGATCTTCGCCACGTTGATTCAGGCAAAAACCTAACAAAACTCGAGCGCGTACAACATGGCATCGACCGTGGACACACTCGACTACAAAGACTAAACGTGGTCTTAGCAGCTTCAAGAACTCAAGATTCTTCTTCTCAATTGGAAGCACCAGTTCATGCAGGCAATGGTGAGTACCTAATGGAATTGTCAATAGGAACACCACCAATTTCCTACCCTGCAGTTTTGGACACAGGAAGTGATCTCATTTGGACTCAATGCAAACCTTGTTCACAATGTTACAAACAACCAACACCAATTTTTGATCCAAAAAAATCCTCAACTTTTTCTAAGCTATCATGTAGTAGCAACTTATGCAAAGCTTTACCTTCCTCATCTTGTAATGATGGTTGCCAATATGTTTATTCATATGGTGATTATTCAATGACACAAGGTATTTTAGGTAGTGAAACATTCACTTTTGGTGATGATAAAAAAAACAAAGTTTCAATTAAAAACATTGGTTTTGGTTGTGGTGAAGATAATGAAGGTGAAGGTTTTGAACAAGCTTCAGGTTTAGTTGGACTTGGACGTGGCCCTTTATCTTTGGTTTCACAATTGAAAGAACAAAAATTCTCTTATTGTTTAACATCAATGGATGACAACAAAAAAAGTGTTCTTTTATTAGGATCACTTGCAAATGTTAACACAAAAGAGGTGAAAATCACAACACCTCTTATTAAAAATCCATTGCAACCATCTTTTTACTATCTTTCACTTGAAGGAATCACCGTTGGTGACAAAAGATTGTCTATAAAAAAAAGTACTTTCGAAGTCGGCGATGGTGGAAGTGGTGGTATGATTATAGACTCTGGCACAACAATTACATATTTAGAAGAGAATGCTTTTGTTTCACTCAAAAAGGAGTTCATTTCGCAAACAAAACTTCCGGTGGACGATTCGAGTTCCACCGGATTAGATGTTTGTTTTAGTTTGCCATTAGGGAAAACACAAGTTGAAATTCCAAAGTTGGTTTTTCATTTTGAAGGTGGTGATTTGGAATTGCCTGGTGAGAATTATATGATTGCTGATTCAAATTTGGGTGTGGCTTGTTTGGCTATGGGAGCTTCTAATGGAATGTCAATATTTGGTAATGTTCAACAGCAGAACATTTTGGTTAACTATGATCTTCAGAAGGAAACTATTACCTTTGTTCCTACTCAATGTAATAATTTGTGA 1359 0.3613 MFMATQNYSKCVIFVTLLITILFVTPISSTSRKSLNSHHNIFQGGFRVDLRHVDSGKNLTKLERVQHGIDRGHTRLQRLNVVLAASRTQDSSSQLEAPVHAGNGEYLMELSIGTPPISYPAVLDTGSDLIWTQCKPCSQCYKQPTPIFDPKKSSTFSKLSCSSNLCKALPSSSCNDGCQYVYSYGDYSMTQGILGSETFTFGDDKKNKVSIKNIGFGCGEDNEGEGFEQASGLVGLGRGPLSLVSQLKEQKFSYCLTSMDDNKKSVLLLGSLANVNTKEVKITTPLIKNPLQPSFYYLSLEGITVGDKRLSIKKSTFEVGDGGSGGMIIDSGTTITYLEENAFVSLKKEFISQTKLPVDDSSSTGLDVCFSLPLGKTQVEIPKLVFHFEGGDLELPGENYMIADSNLGVACLAMGASNGMSIFGNVQQQNILVNYDLQKETITFVPTQCNNL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02551 452 Pfam Xylanase inhibitor C-terminal 296 445 IPR032799 -
Car05g02551 452 Gene3D Acid Proteases 271 452 IPR021109 -
Car05g02551 452 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 327 338 IPR001969 GO:0004190|GO:0006508
Car05g02551 452 ProSiteProfiles Peptidase family A1 domain profile. 106 445 IPR033121 -
Car05g02551 452 Pfam Xylanase inhibitor N-terminal 106 271 IPR032861 -
Car05g02551 452 Gene3D Acid Proteases 83 270 IPR021109 -
Car05g02551 452 SUPERFAMILY Acid proteases 99 449 IPR021109 -
Car05g02551 452 CDD pepsin_A_like_plant 105 449 IPR034161 -
Car05g02551 452 PANTHER OS07G0603500 PROTEIN-RELATED 17 451 - -
Car05g02551 452 PANTHER OS08G0469000 PROTEIN 17 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02551 Car-Chr5 70604594 70606283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02551 88 452 Miscellaneous Gene Families AT1G77480 27.644 3.84e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02551 - - gmx:100811294 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02551 05 70604594 70606283 Car05g02551 05 70604594 70606283 ECH