Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02548 ATGTGGCATCGCTTATCGTCATCTAAACTCGACCTCAGAAATTTTGGTTCAGGGTTAGGGTTACGTCTTCTTAGACGATCGTTTTCTTCTGAGCCGGTGAAGAGGTTCGCTGCGTTGTGGGGAAACGGCGATTTCGGCAGACTGGGTCTTGGCAAATTGGATTCTCAATGGACTTCTGCTATTTGCACCTCCTTCCACAACCAAAACCTTAAAGCCATTGCTTGTGGCGGTGCTCACACTCTCTTCTTAACAGACAATGGATGTGTTTATGCTACTGGTCTCAACGATTTTGGACAGCTTGGTATATCGGAGAGTAAACACTACTCAGTTGTGCCACTTCAAGTTTTTGGCCTTGAGAAGAAAGTTGTGCAGATCTCTGCTGGTTATAATCATTCAAGTGCAATAACAGTGGATGGAGAACTATACATGTGGGGTAAAAATACAACTGGGCAGCTTGGACTCGGAAAAAGGGCTCCCAAAACAATTCCTTTGCCAACTAAAGTTGAATACTTGGATGGAATCACCATTAAAATGGCAGCTCTGGGTTCTGAGCACTCAGTGGCTATTAGTGATGGAGGAGAGGCGTTTAGTTGGGGAATGGGAGTGTCTGGTCGACTTGGTCATGGCCATGAGTCAAGCGTACTAGGATTCTTCAAAAGCTACAGTGAGTACACCCCAAGGCTTATAAAGGATCTTGAAGGAATCAAGGTAAACTATGTAGCTGCTGGGATGCTAAACTCGGCTTGTACGGATGAAAATGGTTCTGTTTTTATATTTGGGGAGAAAGGGATTGACAAATTACGCTTGAAGGAGACTAGTAATGCAACAAAACCATTGTTGGTCAGTGAACTTCCATACGCTGAAGAAGTTGCTTGTGGTGGCTATCATACCTGTGTCTTGACAAATTCTGGTGAGCTTTATACTTGGGGTTCAAATGAAAATGGTTGCCTTGGCATAGGGTCCTCATATGCCATTCATCAACCTGAAAAGATTCAAGAGCCATTCTTGGAGTCTTCTGTTGTTCAAGTTTCTTGTGGTTGGAAGCATACAGCAGCCATTTGTGGAGGAAGAATCTTCACATGGGGTTGGGGAGGTTCCAATGGAACTTTCTCTGATGATGGACATTCTTCGGGTGGACAATTGGGTCATGGAAGTGATGTGGATTATATAAATCCTTCAAGAGTTTGCTTTCCAGAAAACGTGAAAGCATTGCAAGTTTCATGTGGTTTCAATCATACCGGTGCTATACTTGAATATGCATAG 1263 0.4363 MWHRLSSSKLDLRNFGSGLGLRLLRRSFSSEPVKRFAALWGNGDFGRLGLGKLDSQWTSAICTSFHNQNLKAIACGGAHTLFLTDNGCVYATGLNDFGQLGISESKHYSVVPLQVFGLEKKVVQISAGYNHSSAITVDGELYMWGKNTTGQLGLGKRAPKTIPLPTKVEYLDGITIKMAALGSEHSVAISDGGEAFSWGMGVSGRLGHGHESSVLGFFKSYSEYTPRLIKDLEGIKVNYVAAGMLNSACTDENGSVFIFGEKGIDKLRLKETSNATKPLLVSELPYAEEVACGGYHTCVLTNSGELYTWGSNENGCLGIGSSYAIHQPEKIQEPFLESSVVQVSCGWKHTAAICGGRIFTWGWGGSNGTFSDDGHSSGGQLGHGSDVDYINPSRVCFPENVKALQVSCGFNHTGAILEYA 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 35 86 IPR000408 -
Car05g02548 420 Pfam Regulator of chromosome condensation (RCC1) repeat 40 83 IPR000408 -
Car05g02548 420 Pfam Regulator of chromosome condensation (RCC1) repeat 303 353 IPR000408 -
Car05g02548 420 Pfam Regulator of chromosome condensation (RCC1) repeat 86 135 IPR000408 -
Car05g02548 420 Pfam Regulator of chromosome condensation (RCC1) repeat 138 189 IPR000408 -
Car05g02548 420 Pfam Regulator of chromosome condensation (RCC1) repeat 374 416 IPR000408 -
Car05g02548 420 Pfam Regulator of chromosome condensation (RCC1) repeat 193 245 IPR000408 -
Car05g02548 420 PANTHER UBIQUITIN-PROTEIN LIGASE E3A-RELATED 33 420 - -
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 87 138 IPR000408 -
Car05g02548 420 Gene3D - 34 161 IPR009091 -
Car05g02548 420 Gene3D - 162 419 IPR009091 -
Car05g02548 420 SUPERFAMILY RCC1/BLIP-II 374 417 IPR009091 -
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 303 IPR000408 -
Car05g02548 420 SUPERFAMILY RCC1/BLIP-II 39 365 IPR009091 -
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 193 253 IPR000408 -
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 139 192 IPR000408 -
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 356 IPR000408 -
Car05g02548 420 PANTHER OS11G0545800 PROTEIN 33 420 - -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 36 52 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 70 83 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 89 105 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 139 155 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 179 195 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 195 209 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 293 311 IPR000408 -
Car05g02548 420 PRINTS Chromosome condensation regulator RCC1 signature 351 372 IPR000408 -
Car05g02548 420 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 356 419 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02548 Car-Chr5 70560314 70571099 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02548 - - vun:114196144 690.263