Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02540 ATGATGAGGTCAGGGAAGTTTGGATTTTTTGTTGTCGTGCTCTTCTTGAGCTCTTCTAATTGTTTAGCTTGGTTTGGTAGTAGTAAACACAAAAGTTCAAGTGCAAATCAACAACCCtcgtcatcttcatcatcacctttaccttcatTGTTAAACCGTTTTCGTTCTGGCTCATCCGTCGTGTTCCCGGTTCACGGGAATGTTTACCCTGTTGGGTTTTATAATGTGACTCTCAACATTGGGCAACCACCAAGGCCATATTTTCTTGATATTGACACCGGTAGTGACCTAACATGGCTTCAATGTGATGCACCTTGTTCTCGTTGCTCTCAGACACCACACCCGCTTTACAGGCCTAGCAATGACTTAGTACCCTGCAGGGATTCCCTTTGTGCATCCGTGCACCAGACAGATAACTATGACTGTGAAGTCCAGCATCAATGTGACTATGAAGTTGAGTATGCAGATCACTACTCATCCCTTGGTGTACTTGTCAATGATGCCTATGTTCTCAATTTTACAAACGGAGTGCAACTTAAAGTTCGTATGGCACTTGGATGTGGATATGATCAGATTTTTCCAGATTCTTCCTACCATCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGTAAATCCAGCTTGATATCACAACTAAATAGTCAGGGTTTGGTGAGAAATGTCGTCGGACACTGTTTGAGTGCACAAGGAGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGACTTTGACTCCAATGTCATCAAGAGATTACAAACATTACTCAGCGGGGGCAGCTGAACTCATCTTTGGAGGGAAGAGGACCGGATTTGGAAATCTTTTTGCTGTTTTTGACACCGGGAGTTCTTACACTTACTTCAACTCTGACGCTTATCAAGCACTAGTTTCTTGGTTGAAGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGATCAAACTCTCCCTATGTGTTGGTATGGAAAAAGACCTTTCAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCAATTGCATTTAGTTTCCCAAGCAGTGGGAGAATGAAAGCCCAATTTGAAATCCCTCCTGAAGCATATTTGATTATATCAAACATGGGAAATGTTTGCTTGGGCATTCTTAACGGATCTGAAGTAGGAATGGGGGATCTTAACCTAATCGGAGACATATCCATGCTAGACAAAGTGATGATATTTGACAATGATAAGCAGTTGATCGGTTGGGCACCGACAGATTGTAACCGAGTTCCAAAATCTAGAGATGTCAGCTTTTGA 1305 0.4138 MMRSGKFGFFVVVLFLSSSNCLAWFGSSKHKSSSANQQPSSSSSSPLPSLLNRFRSGSSVVFPVHGNVYPVGFYNVTLNIGQPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRDSLCASVHQTDNYDCEVQHQCDYEVEYADHYSSLGVLVNDAYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNSQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLTLTPMSSRDYKHYSAGAAELIFGGKRTGFGNLFAVFDTGSSYTYFNSDAYQALVSWLKKELAGKPIKEAPEDQTLPMCWYGKRPFRSVYEVRKYFKPIAFSFPSSGRMKAQFEIPPEAYLIISNMGNVCLGILNGSEVGMGDLNLIGDISMLDKVMIFDNDKQLIGWAPTDCNRVPKSRDVSF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02540 434 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 428 - -
Car05g02540 434 Pfam Xylanase inhibitor C-terminal 285 419 IPR032799 -
Car05g02540 434 PANTHER ASPARTYL PROTEASES 5 428 IPR001461 GO:0004190|GO:0006508
Car05g02540 434 Gene3D Acid Proteases 52 243 IPR021109 -
Car05g02540 434 ProSiteProfiles Peptidase family A1 domain profile. 74 419 IPR033121 -
Car05g02540 434 SUPERFAMILY Acid proteases 66 426 IPR021109 -
Car05g02540 434 Gene3D Acid Proteases 244 427 IPR021109 -
Car05g02540 434 PRINTS Pepsin (A1) aspartic protease family signature 80 100 IPR001461 GO:0004190|GO:0006508
Car05g02540 434 PRINTS Pepsin (A1) aspartic protease family signature 285 296 IPR001461 GO:0004190|GO:0006508
Car05g02540 434 PRINTS Pepsin (A1) aspartic protease family signature 395 410 IPR001461 GO:0004190|GO:0006508
Car05g02540 434 Pfam Xylanase inhibitor N-terminal 74 244 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02540 Car-Chr5 70483675 70487787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02540 56 429 Miscellaneous Gene Families AT1G44130 52.255 3.46e-143 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02540 - - gmx:100812524 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02540 05 70483675 70487787 Car05g02540 05 70483675 70487787 ECH