Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02538 ATGAAAAAATGGGTGGTTTTGGTGGTTTTTTTGGTATCATTGAAAACATTAAGTTTTGGAGTTAAAGAAGAAGAAGTTACATACGATGGAAGATCTCTTATCATCAATGGCCACAGAAATATTCTCTTCTCTGGTTCTATTCATTACCCCCGCAGCACCCCTCAGATGTGGCCAAATTTGATAGCGAAAGCAAAACAAGGTGGTTTGGATGTTATTCAGACTTATGTGTTTTGGAATCTTCATGAGCCCCAACCCGCCAAGTATGATTTCAGCGGCAGATATGACTTGGTGAGATTCATAAAGGAAATCCAAGCTCAAGGATTGTATGTTTGTCTCAGGATTGGACCTTTCATCGAGAGTGAATGGACATACGGGGGATTCCCATTTTGGCTACACGATGTCCCTGGCATTGTCTACCGAACGGACAATAAGCCTTTCAAGTTCTACATGCAAAATTTTACAACAAAAATCGTGAACATGATGAAAGAAGAGGGTTTATATGCTTCGCAAGGAGGCCCAATTATATTGTCACAGATTGAGAATGAATATCAAAACATCGAAAAGGCATTCGGGGTCGCAGGATCGCAGTATGTTGAATGGGCTGCAAAAATGGCAGTGGGCCTTAATACTGGCGTGCCGTGGGTTATGTGCAAGCAAACCGATGCTCCTGATCCTGTGATTAATGCATGCAATGGTATGAGATGTGGAGAAACTTTTACCGGACCAAACTCCCCCAATAAGCCTGCTTTGTGGACGGAGAATTGGACATCTTTCTATCAAGTTTATGGTGGAGTGCCATATATACGCTCTGCTGAAGACATTGCATTTCATGTCACTCTTTTTATTGCAAGAAACGGAAGCTTTGTCAACTACTATATGTATCATGGTGGAACTAACTTTGGAAGAACAAGCTCTGCTTATATTATAACAGCCTATTATGATCAAGCACCACTTGATGAATATGGTTTGTTCAGGCAACCTAAGTGGGGACATCTCAAGGAGTTACATGCTGCAATCAAGTCTTGCTCCACCACTTTATTACAAGGAGTGCAGAGGAACTTTTCTTTAGGTGAAATGCAGGAGGCTTATGTTTTTGAAGAAGAAAATGGAGAATGTGTTGCGTTCCTTATAAACAATGATAGAAGGAATAATGTTACTGTCCAATTCCACAATAGTTCACATGAATTGCTCCCCAAGTCAATAAGTATCTTACCAGATTGTCAAAATGTGGTTTTCAATACTGCAAATgtaaataCAACGAGCAACATAAGAATCATAACTTCAAGACAAAACTTCAGCTCAGTGGATGATTGGAAACAATACCAAGATGTCATTTCAAAATTTGATGACACCTCACTAAGATCAAACTCATTACTTGAACAAATGAATACAACCAAAGATATTTCTGATTACCTTTGGTATACTCTTAGACTTGAAAATAATTTATCTTGCGGCGAACCAACGCTTCGTCTTCATTCTGCTGCTCATGTTGCTTATGCTTTTGTGAACGACACATACATTGGAGGGGCACATGGAAATCATGATGTGAAGTCATTTACACTAGAGCTCCCTGTTACATTAAATGAAGGAAAAAACAATATTTCTATTCTCAGCGTTATGGTTGGACTTCCTGATTCAGGGGCATTTCTTGAAAGAAGATTTGCTGGTTTAATCAATGTAGAACTTCAGTGTAGTAAACAAGAGTCTCTTAATTTGAACAATTATACATGGGGATATCAGGTTGGATTACTGGGAGAACAATTAGAAGTATATAAAGAACAAACTAGCAGTGACATTGAATGGACTCAATTGGAGCATATCATGATTGATCAAATTACTCTCACTTGGTACAAGACTACATTTGACACACCTAAGGGAGATGACCCTGTTGTCTTAGACCTAAGTTCTATGGGAAAAGGTGAGGCTTGGGTAAATGGACAAAGCATTGGTCGCTATTGGATTTTGTTTCATGATTCCAAAGGCAACCCTTCACAATCATTGTATCATGTTCCTCGGTCTTTCCTTAAAGAGAGTGAAAACAGTTTGGTTTTGTTAGAGGAAGGTGGTGGGAACCCTCTTGATATCTCCTTGAACACTGTTTCAGTCACAGATTTACATGAAAACTTTTCTAAATTGCCATTCCCCACCTCTGTTTAA 2157 0.3904 MKKWVVLVVFLVSLKTLSFGVKEEEVTYDGRSLIINGHRNILFSGSIHYPRSTPQMWPNLIAKAKQGGLDVIQTYVFWNLHEPQPAKYDFSGRYDLVRFIKEIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPGIVYRTDNKPFKFYMQNFTTKIVNMMKEEGLYASQGGPIILSQIENEYQNIEKAFGVAGSQYVEWAAKMAVGLNTGVPWVMCKQTDAPDPVINACNGMRCGETFTGPNSPNKPALWTENWTSFYQVYGGVPYIRSAEDIAFHVTLFIARNGSFVNYYMYHGGTNFGRTSSAYIITAYYDQAPLDEYGLFRQPKWGHLKELHAAIKSCSTTLLQGVQRNFSLGEMQEAYVFEEENGECVAFLINNDRRNNVTVQFHNSSHELLPKSISILPDCQNVVFNTANVNTTSNIRIITSRQNFSSVDDWKQYQDVISKFDDTSLRSNSLLEQMNTTKDISDYLWYTLRLENNLSCGEPTLRLHSAAHVAYAFVNDTYIGGAHGNHDVKSFTLELPVTLNEGKNNISILSVMVGLPDSGAFLERRFAGLINVELQCSKQESLNLNNYTWGYQVGLLGEQLEVYKEQTSSDIEWTQLEHIMIDQITLTWYKTTFDTPKGDDPVVLDLSSMGKGEAWVNGQSIGRYWILFHDSKGNPSQSLYHVPRSFLKESENSLVLLEEGGGNPLDISLNTVSVTDLHENFSKLPFPTSV 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02538 718 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Car05g02538 718 Gene3D Glycosidases 22 343 - -
Car05g02538 718 SUPERFAMILY Galactose-binding domain-like 401 557 IPR008979 -
Car05g02538 718 PANTHER BETA-GALACTOSIDASE 6 22 711 - -
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 250 265 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 287 302 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 306 322 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 612 626 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 PRINTS Glycosyl hydrolase family 35 signature 639 655 IPR001944 GO:0004553|GO:0005975
Car05g02538 718 Pfam Beta-galactosidase jelly roll domain 613 685 IPR025300 -
Car05g02538 718 Gene3D - 439 576 - -
Car05g02538 718 Pfam Glycosyl hydrolases family 35 32 338 IPR031330 -
Car05g02538 718 Gene3D - 577 709 - -
Car05g02538 718 Pfam Beta-sandwich domain in beta galactosidase 346 417 IPR041392 -
Car05g02538 718 SUPERFAMILY Galactose-binding domain-like 576 705 IPR008979 -
Car05g02538 718 SUPERFAMILY (Trans)glycosidases 24 342 IPR017853 -
Car05g02538 718 PANTHER BETA-GALACTOSIDASE RELATED 22 711 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02538 Car-Chr5 70460635 70467756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02538 5 703 Glycoside Hydrolase AT5G63800 61.857 0.0 937
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02538 - - gmx:100818637 1277.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02538 05 70460635 70467756 Car05g02538 05 70460635 70467756 ECH