Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02509 ATGAGCTTAGCATTTGACATGATGAGGAAATCCAGCACCATCCTTACTCACTTAAAATCGAAGAAGATTAACTTCTTCTCACCTTCCACTGCTCTTCTTTCCCCTCAACGCAACCCTATCCTCACCAACCGCTTTAACTCAACCACCGCACATATTCCTTTCACTTCCAATCCCATTCACGATCAGCATGTAATAGATTTTCCTGGTGGAAATGTCAAATTCATCCCTGAAATGAGGTTCATACCTGAATCATCTCAAGACAGAATCCCTTGCTACCGTGTTCTCGATCATAATGGGGAGCAGATTTTTGGGACTGATTTTGTGCAGGTCAGTGAGGATGTTGCTGTTAAAATGTATAGTAACATGGTTACACTCCAAACTATGGACAATATCTTCTATGAAGCACAAAGGCAAGGCAGAATCTCATTTTATGTAACAACAGTAGGGGAAGAAGCTATCAACATTGCATCAGCTGCAGCTCTTTCCATGGATGATGTTATTTTCCCTCAGTATAGGGAACAAGGAGCCTTGTTATGGCGTGGTTTCACTCTGCAAGAATTTGCCAATCAGTGTTTTTCTAATAAGTTTGATAATGGGAAAGGAAGGCAGATGCCGGCCCATTATGGGTCCAACAAGCTCAATTACATGACTGTAGCATCAACGGTTGCTACGCAAATTCCCCATGCCGTTGGAGCTGCATATTCCTTAAAGATGGACAAAAAGGATGCATGTGCCGTCACTTACTTTGGAGATGGTGGCTCAAGTGAGGGAGATTTCCATGCCGGATTAAATTTTGCAGCGGTAATGGAGGCCCCAGTCATTTTTATTTGCCGGAATAATGGATGGGCTATCAGTACCCCTACATCAGATCAGTTTCGAAGTGATGGTATTGTTGTGAAAGGACAGGCTTATGGAGTCCGTAGCATTCGTGTAGATGGGAATGATGCACTGGCCATTTATAGTGCTGTTCAAGCTGCTCGTCAAATGGCCGTTAGCGAAGAGAGACCAATTCTAATAGAAGCTCTTACATATAGAGTAGGACACCACTCTACATCAGATGATTCTACCAAGTATCGTCCCGCCAACGAGATTGAATGGTGGAGATTAGCTCGTGATCCTGTGGCGAGACTTAGAAAATGGATAGAAAGGAATGGTTGGTGGAATGACATGGCTGAGTCTGAGCTTAGAAACAATTTGAGACATCAGCTTCTGCGGACCATTCAAGTTGCAGAGAGTGTAGAGAAACCTCCACTTGCAGACATGTTTAGTGATGTTTATGATGTTCCTCCATCCAATCTCTGTGAACAGATGAAATGGCTGAAGGAGACCGTAAAAAAACATCCACGGGAGTACCCAACAAATATTTCCATGTAA 1374 0.4323 MSLAFDMMRKSSTILTHLKSKKINFFSPSTALLSPQRNPILTNRFNSTTAHIPFTSNPIHDQHVIDFPGGNVKFIPEMRFIPESSQDRIPCYRVLDHNGEQIFGTDFVQVSEDVAVKMYSNMVTLQTMDNIFYEAQRQGRISFYVTTVGEEAINIASAAALSMDDVIFPQYREQGALLWRGFTLQEFANQCFSNKFDNGKGRQMPAHYGSNKLNYMTVASTVATQIPHAVGAAYSLKMDKKDACAVTYFGDGGSSEGDFHAGLNFAAVMEAPVIFICRNNGWAISTPTSDQFRSDGIVVKGQAYGVRSIRVDGNDALAIYSAVQAARQMAVSEERPILIEALTYRVGHHSTSDDSTKYRPANEIEWWRLARDPVARLRKWIERNGWWNDMAESELRNNLRHQLLRTIQVAESVEKPPLADMFSDVYDVPPSNLCEQMKWLKETVKKHPREYPTNISM 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02509 457 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 41 456 - -
Car05g02509 457 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 87 452 IPR029061 -
Car05g02509 457 CDD TPP_E1_PDC_ADC_BCADC 118 410 - -
Car05g02509 457 Pfam Dehydrogenase E1 component 121 416 IPR001017 GO:0016624
Car05g02509 457 Gene3D - 60 456 - -
Car05g02509 457 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 41 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02509 Car-Chr5 70169050 70172548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02509 60 295 Acyl Lipid Metabolism Gene Families AT5G09300 78.814 2.26e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02509 K00166 - gmx:100779198 707.212