Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02505 ATGGAATCATGCACAACACCTTCATACTCCATCTTACTTCTCTTCTTCACATTCCTCACTATCCTCTCTCTTCAATTTTCAACCCGCTCCCTCTTCCCTCTTTCGATTCTCTTCCAACAACAACCCTCCCTTCATCCCACAACATGCTCCTCTTTTTTCACTCACCTTCCTCCCAGAAAACATATCATGTCCATCGTCGATTTCGGAGCTGTTGCTGATGGCAAAACCTCCAATACCGATTCGTTTCGAAGGGCAATTCGCTACATGCAACGTTTTCAGAATAAAGGTGGCTCCCAGCTTAATATCCCCGCCGGAATATGGCTCACCGGTAGTTTTAATCTCACCAGTGATTTCACGCTTTTTCTTCATCACGGTGCTGTTCTTTTGGGTTCTCAGGATCCAAAAGAATGGCCTATTATTGAACCGTTGCCATCTTATGGAAGGGGAAGAGAGAGGTTAGGAGGAAGACACATAAGCCTTATACATGCAAATGGCGTCCGTAATGTCGTCATCACAGGAGAAAATGGGACAGTTGATGGTCAAGGGAAGATGTGGTGGGATCTTTGGTGGAACAGAACTTTGCAGCACACAAGAGGCCACCTCCTTGAATTGATGAACTCACAAAATGTTCTTGTATCAAACCTCACTTTTAAAAATTCGCCTTTCTGGACCATCCATCCTGTTTACTGCAGTAACGTTGTGATCAAAGGGATGACAATCTTGGCTCCTCTTAATGCTCCAAATACAGATGGCATAGACCCAGACTCGAGTACCAATGTGTGTATTGAAGATAACTACATTGAAAGTGGAGATGATCTTGTAGCCATCAAGAGTGGTTGGGATCAATATGGAATCGCCATGGCTCGGCCTAGCACAAATATCATAGTGAGGAGAGTTTCAGGCACTACCCCAACTTGCTCTGGAGTAGGAATAGGCAGTGAGATGTCTGGTGGGATTTCAAATATTATAATCGAGAATTTGCACGTTTGGAATTCTGCAGCTGGTGTTCGCATAAAATCCGATAAAGGCAGAGGGGGTTATATAACGAATGTGACAATAAGCAATATAAGAATGGAGAGAGTGAAGATACCCATTAGGTTCAGTAGAGGTTCAAACGACCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTTAAAGATATTTTAATCAGTAATGTGGTCAGTGTAAATTCAACAAAATCCCCAGTTTTGGAAGGTGTAGAGGGTTCTTCGTTTGTAGGCTTGTGCTTCAAGAATATTACTCTCCTTGGTGTAGCCTTATCTGCAACATGGCATTGTGAATATGTCACTGGTTTTGCCAATGGGGTGTTCCCTGTTCCATGTCCTGAGATGCAGAACAATGGCACTTCATCATGGTGTTGA 1389 0.4348 MESCTTPSYSILLLFFTFLTILSLQFSTRSLFPLSILFQQQPSLHPTTCSSFFTHLPPRKHIMSIVDFGAVADGKTSNTDSFRRAIRYMQRFQNKGGSQLNIPAGIWLTGSFNLTSDFTLFLHHGAVLLGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHANGVRNVVITGENGTVDGQGKMWWDLWWNRTLQHTRGHLLELMNSQNVLVSNLTFKNSPFWTIHPVYCSNVVIKGMTILAPLNAPNTDGIDPDSSTNVCIEDNYIESGDDLVAIKSGWDQYGIAMARPSTNIIVRRVSGTTPTCSGVGIGSEMSGGISNIIIENLHVWNSAAGVRIKSDKGRGGYITNVTISNIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSVNSTKSPVLEGVEGSSFVGLCFKNITLLGVALSATWHCEYVTGFANGVFPVPCPEMQNNGTSSWC 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02505 462 Gene3D - 50 442 IPR012334 -
Car05g02505 462 SMART pbh1 257 289 IPR006626 -
Car05g02505 462 SMART pbh1 291 313 IPR006626 -
Car05g02505 462 SMART pbh1 319 340 IPR006626 -
Car05g02505 462 SMART pbh1 230 256 IPR006626 -
Car05g02505 462 SMART pbh1 348 369 IPR006626 -
Car05g02505 462 PANTHER PECTIN LYASE-RELATED 4 462 - -
Car05g02505 462 Pfam Glycosyl hydrolases family 28 159 439 IPR000743 GO:0004650|GO:0005975
Car05g02505 462 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 4 462 - -
Car05g02505 462 SUPERFAMILY Pectin lyase-like 52 452 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02505 Car-Chr5 70136938 70140236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02505 1 462 Glycoside Hydrolase AT4G33440 68.103 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02505 - - mtr:MTR_3g096330 839.721