Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02504 ATGAAGATGAAATCCCATTCTTCTATTTTCTTCATGTTCCTCATTATTGTAGCCTTTAGCAGCATACAAGTATGCTTAGCAGACTATGATAATCTACAGGACACATGCCCCTCATCTCCATCAAATAAACAGACAACATTATTTATCAATGGCCTCTCTTGCAACACCCCAACTAACACTTCTGCTCATGATTTCAAGAACATGGAACTAAGCAAAGCTGGTTCAAGAGATGATTTTGGTTCATCAATTAACATTGTCACTGCTTCTAAGTTCCCTGGCCTCAACACACTTGGTATCTCAATTGGTAGAACAGATATTGAAATGGATGGGATTGTGAATCTGCACAATCATCCAAGAGCCACTGAGATGATCTTTGTTAAGGAAGGGGTATTGGAAGCTGGATTTCTTGATACACAAAACAAGGTTTTCCAGAAGACTATCAAGGAAGGTGATGTGTTTGTGATCCCTAAGGGTTTGTTCCATTACTTTCTAAATCGCGGTGTAGAAGCTGCAACTGTGTTGTCTGTGTTTAATAGCCAAAATCCAGGGTTGGGATCTCTTACGGCCACACCTTCTTCTATTGAATCAGTTGAGAAGATAAAGAGGAAGCTTATATCACTTTCTGAGTTAGAACATGATAGTGTTTATGATTTGAGTTTGGCAGTGTCAGAGATTATTTACAGTTAG 687 0.3886 MKMKSHSSIFFMFLIIVAFSSIQVCLADYDNLQDTCPSSPSNKQTTLFINGLSCNTPTNTSAHDFKNMELSKAGSRDDFGSSINIVTASKFPGLNTLGISIGRTDIEMDGIVNLHNHPRATEMIFVKEGVLEAGFLDTQNKVFQKTIKEGDVFVIPKGLFHYFLNRGVEAATVLSVFNSQNPGLGSLTATPSSIESVEKIKRKLISLSELEHDSVYDLSLAVSEIIYS 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02504 228 SUPERFAMILY RmlC-like cupins 76 194 IPR011051 -
Car05g02504 228 Pfam Cupin 80 191 IPR006045 -
Car05g02504 228 PRINTS Germin signature 115 135 IPR001929 GO:0030145
Car05g02504 228 PRINTS Germin signature 145 165 IPR001929 GO:0030145
Car05g02504 228 PRINTS Germin signature 178 193 IPR001929 GO:0030145
Car05g02504 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 15 211 - -
Car05g02504 228 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 15 211 - -
Car05g02504 228 SMART Cupin_1_3 71 198 IPR006045 -
Car05g02504 228 ProSitePatterns Germin family signature. 110 123 IPR019780 GO:0030145
Car05g02504 228 CDD cupin_OxOx 28 190 - -
Car05g02504 228 Gene3D Jelly Rolls 27 212 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02504 Car-Chr5 70135527 70136570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02504 9 183 Miscellaneous Gene Families AT3G05930 41.243 7.79e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02504 - - mtr:MTR_3g096330 360.918