Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02486 ATGATGAATCCTCAAATTGCAACTACCATCGATTTGCTTCAACTCCCACAACCCTTTTTCTCTCGCAAAACCTTCTTCACCCATTCTTCTCTTTCTCAACGTCTTCTTACAACTAAATTTCCACACAACAACCCTCGCAACTGCAAATTTAGAATCACTGCTTCCAATTCTCTTTCAGTTTCAAATACATCATCCTCCAGCAAAGAACAAGCCGAATCTCCTCAGCTATTCGAGAAACTGAAGGAGGCCGAAAGGAAACGGGTAAATGAGTTGGAAGAAGTTGAGAGGAAAGCTAATTTGCAGTTAGATAGGCAACTTGTGTTGGCTTCCTCATGGAACAGAGCTTTGTTGACTTTTCGTGGAAAATTGAAAGGAACTGAATGGGATCCTGAAAACTCTCACAGGATAGACTTCAGTGATTTTCTGAAACTGCTTGATTCCAATAATGTTCAGTTTATAGAGTACTCTGATTATGGACAAGCCATATCAGTTATTTTACCACATTACAAGGACGGGAAAATATCAAGCACTGAAGGGAATCCTAAGGATATTGTTTTTCGGCGTCATGCGGTTGATCAAATGCCAATTGATTGTTGGAATGATGTTTGGGGAAAGCTGCATCAACAAATTGTAAATGTTGATGTCATTAATGTAAACGCTGTACCCGCTGAAGTGTACTCTACAGTTGCAACTGCAGTCGTATGGTCTATGCGTCTTGCCCTGGCTTTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCAGTATATGCAAAGTTGATACCTTGTGATTTGGGAGCTCCTCCTACCCCACCAACCAAGCTTCCAGTCTTAAGAAGACACGCACTTGGTTCTCTAGGCAAGAGTCGGGCTAAATTTATATCCGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGTCAGGAATATATAAAGAGGGAACTACAAGAGATTGTTCGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTACTTCATGGGCCTCCTGGAACTGGTAAAACTTTACTGGCTAAAGCCATCGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAGTGGCACGGAGTTTGTAGAGATGTTTGTAGGGGTTGCTGCGTCCCGTGTTAAAGACCTTTTTGCTAGTGCAAGATCATTTGCTCCTTCTATAATCTTTATTGATGAGATTGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGTGGAGGAGGTGCTGAAAGGGAGCAGGGATTGCTTCAGATACTGACTGAGATGGACGGATTCAAAGTTTCCACAGCAGAGGTGCTTGTGATAGGTGCTACGAATAGATTGGATATTATTGATCCTGCTCTATTGAGGAAGGGTCGTTTCGACAAGATTATTAGAGTTGGTTTACCTTTAAAAGATGGAAGACTTGCCATTTTGAAGGTGCATGCTATGAATAAGCCTTTTCGCTCAGAGGAGGAAAAGGATACTCTACTTAAGGAAATTGCAGAGCTAACAGAAGATTTTACTGGGGCAGAGCTACAAAATATACTAAACGAAGCTGGAATTTTAACAGCCAGGAAGGATCTGGATTACATTGGGCGTGATGAGCTGCTTGAAGCATTAAAAAGGCAAAAAGGAACATTTGAAACAGGGCAAGAGGATATTACAGAAATTCCTGAAGAACTGAGACTGAGATTAGCATATAGAGAAGCAGCTGTTGCTATTCTTGCATGTTATTTTCCTGAACCACACCGGCCTTTTGTTGAGACTGATATAAGTTCTGTTCGCAGCCAGCCAAATTTGCAATATCATGAAACTTTTGGAAAGGTTTTTGCTAGGAAATCAGATTACATAAACTCTGTAGTGCGTTCTTGTGCTCCAAGAGTAATCGAGGAGTTGATGTTTGGGAACGACAACTTGTGTTGGATGTCTGCAAATGCAACGTTCGAAGCTTCAAGGCTTGCAGAATTTTTGATTCTGCAGACTGGAATGACTGCATTTGGGAAAGCATATTACAGAAGCCAAAGTGATCTTGTGCCTAATCTTGCAGTGAAGCTTGAAGCACTCCGAGATGAGTATATGCGTTATGGTACAGAGAAGTGTTCATCTGTGCTAAGAGAATACCACTCAGCTGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGAAAATCACAGCTGAGGAGATTTGGGACATTTATAAGAGTGCTCCTCGTGTAGCTCAGCCTTCTGTGAGTCCACTTGATGAATATGGAGCGCTGATTTATGCTGGACGATGGGGCATCCATGGGATCAGTCTTCCTGGAAGGGTTACATTTGCACCGGGCAATGTTGGGTTTTCGACCTTTGGTGCACCACGCCCTACAGAGCTGCAAATCATTAATGATGAAACATGGAAACTAGTAGATGATATCTGGGATAAAAAGGTTCAAGACATTAGAGATGAAGCTTCAAGGGAGATTGAAGAAGAGAAAGAAAAGCCACAACTTTTGATGGCAAGTCATTTCCTCTGA 2535 0.4154 MMNPQIATTIDLLQLPQPFFSRKTFFTHSSLSQRLLTTKFPHNNPRNCKFRITASNSLSVSNTSSSSKEQAESPQLFEKLKEAERKRVNELEEVERKANLQLDRQLVLASSWNRALLTFRGKLKGTEWDPENSHRIDFSDFLKLLDSNNVQFIEYSDYGQAISVILPHYKDGKISSTEGNPKDIVFRRHAVDQMPIDCWNDVWGKLHQQIVNVDVINVNAVPAEVYSTVATAVVWSMRLALAFGFYVWIDNLMRPVYAKLIPCDLGAPPTPPTKLPVLRRHALGSLGKSRAKFISAEERTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAASGTEFVEMFVGVAASRVKDLFASARSFAPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAEVLVIGATNRLDIIDPALLRKGRFDKIIRVGLPLKDGRLAILKVHAMNKPFRSEEEKDTLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDITEIPEELRLRLAYREAAVAILACYFPEPHRPFVETDISSVRSQPNLQYHETFGKVFARKSDYINSVVRSCAPRVIEELMFGNDNLCWMSANATFEASRLAEFLILQTGMTAFGKAYYRSQSDLVPNLAVKLEALRDEYMRYGTEKCSSVLREYHSAVETITDILLEKGKITAEEIWDIYKSAPRVAQPSVSPLDEYGALIYAGRWGIHGISLPGRVTFAPGNVGFSTFGAPRPTELQIINDETWKLVDDIWDKKVQDIRDEASREIEEEKEKPQLLMASHFL 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02486 844 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 550 IPR027417 -
Car05g02486 844 PANTHER METALLOPROTEASE M41 FTSH 47 812 - -
Car05g02486 844 ProSitePatterns AAA-protein family signature. 446 464 IPR003960 GO:0005524|GO:0016887
Car05g02486 844 Pfam ATPase family associated with various cellular activities (AAA) 341 475 IPR003959 GO:0005524|GO:0016887
Car05g02486 844 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 47 812 - -
Car05g02486 844 SUPERFAMILY FtsH protease domain-like 566 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car05g02486 844 Pfam AAA+ lid domain 505 545 IPR041569 -
Car05g02486 844 Gene3D Peptidase M41 560 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car05g02486 844 CDD AAA 308 476 - -
Car05g02486 844 Coils Coil 501 521 - -
Car05g02486 844 Coils Coil 77 101 - -
Car05g02486 844 Gene3D - 477 553 - -
Car05g02486 844 Gene3D - 285 475 IPR027417 -
Car05g02486 844 Coils Coil 814 834 - -
Car05g02486 844 SMART AAA_5 337 478 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02486 Car-Chr5 69980261 69992909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02486 302 556 Miscellaneous Gene Families AT3G47060 50.980 2.94e-68 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02486 - - gmx:100782783 1372.07