Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02445 ATGGACCAAAATAAAGAGAAAAATGCTCCTTGGCTATCAGTGCCACAGTTTGGGGAATGGGATCAGAAGGGCCCGTTGCCAGACTATTCACTGGATTTCTCAAAAATCCGGGAAATGAGGAAGCAAAACAAGACTAATACTTCAAGAGCAAGTCTTGGTAATGAGGAGGAGCTCAATATGGCTTCTAACAAAAACAATATAAGCACTGATCACAATGAGCGTCAGCACCCCCACTACCACCAAACCAACTCTCCAACTGTAAGATTTCTAGCTACCTATGTTATTCTTTATTTTGTTTGCTATATTTAA 309 0.4045 MDQNKEKNAPWLSVPQFGEWDQKGPLPDYSLDFSKIREMRKQNKTNTSRASLGNEEELNMASNKNNISTDHNERQHPHYHQTNSPTVRFLATYVILYFVCYI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02445 102 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 94 - -
Car05g02445 102 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 13 41 IPR008700 -
Car05g02445 102 PANTHER PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR AVRRPT-CLEAVAGE: CLEAVAGE SITE PROTEIN 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02445 Car-Chr5 69525467 69529562 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02445 - - aprc:113863571 170.244