Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02436 ATGGGTGAAGATAGCCCACGCGTTGGAGGGTTTTCAGCTGGTTTGGCTGTCATATTGAGTGGTGAGGACAGTAAGAAAAAATTGCCGAAAACTCGGCTTCTTTCTTGCTGTGATGATTTGGGTGAACAGTCTGTGGAGAGAACCCTTGAATACGTGTTTGGTCTCCCCAATAGATCACTCAATTCATTGGACGGTCCAGTTGACAGCAGTTTTATTCGTTCTGTCATCAGGAATGTTTTTTCAAGATATAATGCAAATTCGGGTGATTCGAATAGTGTAAATGATGATATGATATGTAGACCAGATGTTGTAGGCTTAGAAGAATCCAGCATATGCGGTGATATTAAAATCATCAAGCCACCTTTTGTTGTAGAGAGCTTGGCAATGTTCAGTAGTGCCAGGGCTAATACTTGTGTTTGGAAAGGAAAATGGATGTATGAAGTTATGTTAGAAACATCTGGCATTCAGCAACTTGGTTGGGCTACTCTTTCCTGCCCTTTCACTGACCATAAAGGCGTTGGCGATGCCGAGGATTCATATGCCTATGATGGGAGACGTGTTAGCAAGTGGAACACGGAAGCTGAGACATACGGTCAGTCATGGGTTGTTGGTGATGTCATCGGGTGTTGCATAGATTTGGAACGAGATGAAATAATATTCTACAGGAATGGCATTTCGCTTGGGATGGCATTCCGAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATCATCCGGCAATCTCTCTCTCCCAGGGTGAAAGATGTGAATTGAACTTTGGAGCTCGACCCTTCAAGTACCCAATTGAAGGCTATCTTCCTCTTCAGACTCCTTCCTCTAAGAGCTACTTTGTCACGCGATTGCTACAGTGCTGGTCAAGATTGTTAGGCATGCATTCAGTGGAACGAGCTGAGCATTCTTTAGCTCAGAAATTGAGAAGAGTAAAGAAGTTTGTTTCATTGGAGGAAATTTTTCGTCCTGTCTCTTATTCTATATGTGAGGAATTATTCTCTGTACTTGAAGAAGATGTTCGACACACAGAGTACATAGTTTGGGGTCCATTCTTGTCCTTCATGTTTGAAGTTTTTGAATTGCATGCACCCCATGACTATTCAAGCTTGGATAAAGTAGTTGAAGTACTGCTACAATTTCAAGGATCACATGTGCTGTTTGAAAACCTCATAAATGCCCTTTCATGCGGTTGTAAAATGGCACCATTAGTATTAACTGAATGTCCTTACTCTGGATCATATTCTTACCTTGCACTGGCATGTTATCTACTGAGAAGAGAGGAACTTATGCTGCTTTGGTGGAAATCACCATATTTTGAATTTTCGTTTGAAGGTTTTCTGTCGCAAAAAATTCCAAATAAGCAGGATCTTGACTCCATGATACCCACTGTTTGGTGGCCTGGTTCATGTGAAGATGCATGTTGTGAAGGTAACATGATGTTGGCAACAACAGCTTTGTCTGAGTCAATGAGCATGATTGAGGAGAAGCATCGGGACCTCTGTCGCTTAGTTATACAATTTATACCCCCTACGACACCTCCCCAATTACCTGGAGCAGTATTTAGGACATTTTTACAAAACCTTCGACTGAAGAACAGAGGGGCCGAAAGGAATGTCCCACCACCTGGTGTTTCTAGCAATTCCGTTCTTGTTTCAACTTATACAGTTGTGCTCCATTTTCTATCTGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTGCAAATCAGATGTTGGTTTCCTTCACAGAGGTGGTCAACAAAGTTTTCCCATACACTTGTTTCTAAAGGATGATCCTCATAGAACTGATATTTCCAGGCTTGGGGGATCCTATACCCATTTATCAAAGCTACACTCTGCAATTGCTCATGAAAGGGACGTCGTTCAATGGGACGAAGGTTGCATGGATAATGAAGAAATCAGAGTGACACATTCAACCAGGCAGAAGCCCTGCTGTTGTTCTAGTTATGATTCTGAATTTTCAAGAAACTTGAAGGTTCCAGCTAAATACCTGGCCAAAGGGTCTCGGGGCCACTGTAGCTCCATTCCAGAAAGACCTGCTCATGTTGCAGCTGAATGCAGTGATGGGAGTTTGAATGACGAGATAACAGATAAACCCAGTTCCAGTGATCAATCTGAACCCGAGTATGGTTACCGCCAAGTGCACCATATGAAATCTGTACCAAAGGATAATAATTTGTCTACAGCTACACTACAAGAAGAAGAGCTGCTTGATGCTTTGTTGTGGCTGTATCAAGTTGGTCTTGCCCCAAATTTTAAGCAGGCATCGTACTATATGACTCATCAGGCACAATCGATCTCCCTCTTGGAGGAAACTGATAAGCAAATAAGAGAACGAGCTTGTGGTGAAAAATTGAAGCATTTGAAAGAAGCTCGTAATGAGTATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGCGCTTGGTACCGTATTTCTCTGTTATCTCGATGGAAGCAGCGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGCTCTTAGCAATATGGATTCAGTGTTTATCTTCACCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCTCCATTTGTTCCGTCCACAATTTTGATCAAGCGTGGACTTGCTTCATTTGTCACTTTTGTAGTTACTCATTTCAATGATCCAAGGATATCAAGTGCAGATCTTAGGGATCTTCTTCTCCAGTCTATATCTGTCCTAGTGCAGTACAGGGAATATTTGGCAGTTTTTGAAAGCAATGTAGCAGCCAACCAGAGGCTGCCAAAAGCTTTATTAGCAGCATTTGATAACAGATCTTGGATCCCGGTGACAAACATACTCCTGCGATTATGCAAGGGTTCTGGTTTTAGTTTTTCAAAAAATGGGGAATCATCTTCATCATCAATTCTTTTCCACCGATTGCTGAAAGAAGCTTGCGTAAATGATGAAGGATTGTTTTCATCTTTTCTAAACCGTCTATTTAATACACTTAGCTGGACCATGACAGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAGAAGTACCAGGTAATAGAGTTTCAACAAAGGAAATGTGGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTTTAGAGTTCTGCACTCATGAGATTCCTCAAGCATTTCTGTCTGGACCAGAAACAAACCTAAGGAGGTTAACTGAGTTGGTTGTATTTATCTTGAATCACATTACTTCTTCAGCTGATGCTGAATTCTTTGAATTGTCCCTTAGACGGCATAACCAATCTTCAGAGAAAGTAAATCGAGGCATGATATTGGCACCTCTTGTAGGGATCATCTTAAATTTATTGGATGCTACTAAGTTGGAAGAATACCAAGAGAACAATGATCTTGTGGATGTTTTTCTAAGCATGGACTGTCCAGATACTGTTCTTTATGGATTCCAATGTCTTGTGGATTATAACTGGGATGGATCTTGCCGGGGGGGAGTATATGTTGCAAAATACAAGCAGCTAGAAAATTTTGTGACCCTCCTCGCTTGCCGCACTATGTCTGAACATGATGAAGTGGACAGTGTTGGAGATACAGACTTTGATGATAGCTTGTGCTGCATATGTTACGCGTGTGAAGCTGATGCCCGGATTGCACCTTGTTCGCATAGGTCTTGCTATGGCTGTATAACTAGGCATCTTTTAAACTGCCAAAGATGTTTCTTTTGCAATGCTACAGTTACAGATGTTAGCAGAATTGATGAGAAAACGGGATAA 3804 0.4154 MGEDSPRVGGFSAGLAVILSGEDSKKKLPKTRLLSCCDDLGEQSVERTLEYVFGLPNRSLNSLDGPVDSSFIRSVIRNVFSRYNANSGDSNSVNDDMICRPDVVGLEESSICGDIKIIKPPFVVESLAMFSSARANTCVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDAEDSYAYDGRRVSKWNTEAETYGQSWVVGDVIGCCIDLERDEIIFYRNGISLGMAFRGIRKMGPGFGYHPAISLSQGERCELNFGARPFKYPIEGYLPLQTPSSKSYFVTRLLQCWSRLLGMHSVERAEHSLAQKLRRVKKFVSLEEIFRPVSYSICEELFSVLEEDVRHTEYIVWGPFLSFMFEVFELHAPHDYSSLDKVVEVLLQFQGSHVLFENLINALSCGCKMAPLVLTECPYSGSYSYLALACYLLRREELMLLWWKSPYFEFSFEGFLSQKIPNKQDLDSMIPTVWWPGSCEDACCEGNMMLATTALSESMSMIEEKHRDLCRLVIQFIPPTTPPQLPGAVFRTFLQNLRLKNRGAERNVPPPGVSSNSVLVSTYTVVLHFLSEGFALGDICGWLKSCKSDVGFLHRGGQQSFPIHLFLKDDPHRTDISRLGGSYTHLSKLHSAIAHERDVVQWDEGCMDNEEIRVTHSTRQKPCCCSSYDSEFSRNLKVPAKYLAKGSRGHCSSIPERPAHVAAECSDGSLNDEITDKPSSSDQSEPEYGYRQVHHMKSVPKDNNLSTATLQEEELLDALLWLYQVGLAPNFKQASYYMTHQAQSISLLEETDKQIRERACGEKLKHLKEARNEYREEVIDCVRHCAWYRISLLSRWKQRGMYAMCMWVVQLLLALSNMDSVFIFTPEYYLEALVDCFHVLRKSDPPFVPSTILIKRGLASFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLAVFESNVAANQRLPKALLAAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSILFHRLLKEACVNDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCGVIFDLSCNLARILEFCTHEIPQAFLSGPETNLRRLTELVVFILNHITSSADAEFFELSLRRHNQSSEKVNRGMILAPLVGIILNLLDATKLEEYQENNDLVDVFLSMDCPDTVLYGFQCLVDYNWDGSCRGGVYVAKYKQLENFVTLLACRTMSEHDEVDSVGDTDFDDSLCCICYACEADARIAPCSHRSCYGCITRHLLNCQRCFFCNATVTDVSRIDEKTG 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02436 1267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1209 1264 IPR013083 -
Car05g02436 1267 MobiDBLite consensus disorder prediction 699 724 - -
Car05g02436 1267 CDD RING-HC_RNF123 1213 1253 - -
Car05g02436 1267 ProSiteProfiles Zinc finger RING-type profile. 1215 1249 IPR001841 -
Car05g02436 1267 SUPERFAMILY Concanavalin A-like lectins/glucanases 125 275 IPR013320 -
Car05g02436 1267 MobiDBLite consensus disorder prediction 706 721 - -
Car05g02436 1267 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 132 IPR045737 -
Car05g02436 1267 Gene3D - 114 289 IPR043136 -
Car05g02436 1267 ProSiteProfiles B30.2/SPRY domain profile. 66 264 IPR001870 -
Car05g02436 1267 SMART SPRY_3 141 263 IPR003877 GO:0005515
Car05g02436 1267 CDD SPRY_RNF123 132 260 IPR035773 -
Car05g02436 1267 Pfam SPRY domain 143 261 IPR003877 GO:0005515
Car05g02436 1267 Pfam Ubiquitin elongating factor core 749 952 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Car05g02436 1267 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF123 41 1266 - -
Car05g02436 1267 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 41 1266 IPR045129 GO:0004842
Car05g02436 1267 SUPERFAMILY RING/U-box 1206 1258 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02436 K12169 - gmx:100800617 2235.68