Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02420 ATGGCGAAGCAGAAACAGAACAACACTATTTTTGTGCACTTGCTGATtctcttcctctctctttcttctctctcGGTGTCAGCAACAACAGTTGTATCTCTCTTGCAAAATTATGGGAAACCCATTTTCAGATCAAACTTTCACACTATTTATGACACTTCAAACTATGGTCTTCTTCAGCTCAGTAATGGATTGGCTCTAACGCCTCAAATGGGATGGAACAGCTGGAACTTCTTTGCATGCAATATCAATGAAACGGTTATTAAGGAAACAGCTGATGCACTGATATCAACGGGGTTGGCTGAGTTAGGTTATGTGTACGTCAATATAGATGATTGTTGGTCTTCTGCGACAAGAAATTCGAAGGGTGACCTAGTCCCTGATCGTAAGACGTTTCCATCAGGAATCAAAGCACTTGCCGATTATGTGCATCGAAAGGGACTCAAACTTGGCATATATTCTGATGCCGGGGCTTTTACATGTCAAGTCCGACCAGGATCAATCTTCCACGAAACTGATGATGCAGATTTATTTGCCTCTTGGGGCGTAGATTATTTGAAGTATGACAATTGTTTCAATCTGGGCATCCCTCCAAAAAAACGGTATCCACCTATGCGTGATGCCCTCAATGAAACTGGACGTACAATTTTCTATTCAATCTGTGAATGGGGTGTTGACGACCCTGCTTTATGGGCAGGCAAGGTCGGTAATAGTTGGCGCACAACTGATGACATTAATGATACATGGGCTAGCATGACAACTATTGCTGATCTTAATGACAAGTGGGCTGCATATGCAGGTCCTGGAGGATGGAATGacccagatatgttggaagttggcaatggtggcatgaCTTACCAAGAATACCGTGCTCACTTCAGCATCTGGGCTTTAGCAAAGgctcctctattggttggttgtgacataaggaatatgactgctgaaacacgggagattttaaccaataaagaagtcattgctataaatcaagACTCACTTGGAGTTCAGGGAAGAAAAGTTCAAGTTTCTGGAATAAATGATTGCAGTCAGGTCTGGGCAGGTCCTTTATCAGGAAGCCGTTTGGCGGTTGCTCTGTGGAATCGATGCTCAAAAGTTGCGACTATAACAGCTTCATGGGAAGCACTTGGGCTTGAATCTGGAATTCATGTTTCTGTGAGGGATTTGTGGCAGCACAAGGTAATAAATGGAGATGCAGTGTCATCATTCAGTGCTCAAGTTGATTCTCATGATTCTAAATTGTACATTTTCACTCCATCTACAGCATCTTACTCTCTAAAGTAG 1302 0.3786 MAKQKQNNTIFVHLLILFLSLSSLSVSATTVVSLLQNYGKPIFRSNFHTIYDTSNYGLLQLSNGLALTPQMGWNSWNFFACNINETVIKETADALISTGLAELGYVYVNIDDCWSSATRNSKGDLVPDRKTFPSGIKALADYVHRKGLKLGIYSDAGAFTCQVRPGSIFHETDDADLFASWGVDYLKYDNCFNLGIPPKKRYPPMRDALNETGRTIFYSICEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNDKWAAYAGPGGWNDPDMLEVGNGGMTYQEYRAHFSIWALAKAPLLVGCDIRNMTAETREILTNKEVIAINQDSLGVQGRKVQVSGINDCSQVWAGPLSGSRLAVALWNRCSKVATITASWEALGLESGIHVSVRDLWQHKVINGDAVSSFSAQVDSHDSKLYIFTPSTASYSLK 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02420 433 CDD GH27 69 331 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 Pfam Alpha galactosidase A 68 331 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 Pfam Alpha galactosidase C-terminal beta sandwich domain 348 422 IPR041233 -
Car05g02420 433 ProSitePatterns Alpha-galactosidase signature. 104 120 IPR000111 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 63 82 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 99 114 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 140 161 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 174 191 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 201 219 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 266 285 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 PRINTS Glycosyl hydrolase family 27 signature 287 308 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 SUPERFAMILY (Trans)glycosidases 60 331 IPR017853 -
Car05g02420 433 SUPERFAMILY Glycosyl hydrolase domain 333 425 - -
Car05g02420 433 Gene3D Aldolase class I 61 333 IPR013785 -
Car05g02420 433 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 45 424 IPR002241 GO:0004553|GO:0005975
Car05g02420 433 Gene3D - 334 426 IPR013780 -
Car05g02420 433 PANTHER ALPHA-GALACTOSIDASE 3 45 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02420 Car-Chr5 69329555 69334388 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02420 1 431 Glycoside Hydrolase AT3G56310 69.515 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02420 K07407 - gmx:100784072 763.837