Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02242 ATGGTGCTCACGTCGTCTGCGCGTGATTACATCAACCGCATCTTGCATGATATCTCTGGCATGAAGGTTCTCATCCTTGATTCTCAAACGGTAAGTATTGTGAGTGTTGTGTACTCACAGTCAGAGCTTCTTCAGAAAGAAGTGTTTTTGGTAGAGTTGGTGGATTCAATTTCCAAGTCAAACGAACCAATGTCACATCTCAAGGCCATTTACTTCCTTCGACCGACGTCAGAGAATATCCAGTATATGCGTCGTCAGCTGGCTAGTCCTAGATTTGGAGAGTATCATCTATTTTTCTCCAACATATTGAAGGACCACCATATTCACTTACTTGCTGATTCGGATGAACAGGAAGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGACTTTGTTGCTATTGATCCTTATCATTTCACTTTCCACGTACCTTCAAATTACATTTATATGCTTCCAGCTGTCGTAGACCCTTCAGCATTGCAGCGTTTCTGTGATCGGGTTGTTGAAGGTCTTGCTGCTGTTTTTTTAGCATTAAAACGGAGACCAGTAATTAGATATCAAAGAACATCTGACATTGCAAAAAGAGTAGCACAGGAAGCAGCAAAACTGATGTACCAAGAGGAAAGTGGTCTTTTCGATTTTAGGCGAATGGAAGTTTCTCCGTTGTTGTTGGTGATTGACAGGAGGGATGATCCTGTAACCCCATTGCTAAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAAGTAGACATCAAATCCATTGGTAAATTTCCAAAGGATCAGGAGGAGGTTGTGCTGTCATCGGAACAAGATTCCTTTTTCAAAGCTAACATGTACGAGAATTTTGGAGATATTGGTATGAATATCAAGCGTCTGGTTGATGAATTTCAACAAGTGGCAAAGAGTAATCAGAACATCCAAACAGTAGAGGACATGGCCAAGTTTGTTGACAACTACCCTGAGTACAGAAAAATGCATGGGAATGTGACAAAGCATGTAACTTTGGTAACAGAAATGAGCAAGATAGTTGAAGAGCGAAAACTTATGTTAGTTTCACAAACAGAACAGGAGTTGGCTTGCAATGGAGGGCAAGGAGCTGCTTTTGAGGCAGTGACAAATCTACTAAACAATGAAAGCATATCAGATATTGACCGACTACGTTTGGTCATGCTATATGCTTTGCGATATGAGAAGGATAGCCCTGTTCAATTAATGCAGCTTTTCAACAAACTGGCTTCCAGATCTGCCAAATACAAACCTGGGCTTGTCCAGTTTCTTTTGAAGCAGGCAGGTGTTGACAAGAGAACTGGTGATCTTTATGGAAATCGAGATCTAATGAATATTGCCCGTAACATGGCACGTGGACTGAAGGGTGTTGAGAATGTTTACACCCAACACCAGCCACTTCTGTTCCAAATCATGGAAAGCATTGTCAAAGGGCGGTTGAGAGATGTGGACTACCCATTTATTGGGAATCACTTTCAACAAGGAAGGCCCCAGGACGTAATTATCTTCATTGTTGGTGGAACAACATATGAGGAGTCACGGTCTGTTGCTCTACAAAATGCCACCAATACAGGCATCCGGTTTATACTTGGTGGCTCTTCTGTTCTTAATTCTAAAAGGTTGTTCAGGGACTTGGAAGAAGCTCAAAGGGTATCCCGTTCTAGCACCTCTGTTGTTTGA 1707 0.4189 MVLTSSARDYINRILHDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISKSNEPMSHLKAIYFLRPTSENIQYMRRQLASPRFGEYHLFFSNILKDHHIHLLADSDEQEVVQQVQEFYADFVAIDPYHFTFHVPSNYIYMLPAVVDPSALQRFCDRVVEGLAAVFLALKRRPVIRYQRTSDIAKRVAQEAAKLMYQEESGLFDFRRMEVSPLLLVIDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDIKSIGKFPKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRLVDEFQQVAKSNQNIQTVEDMAKFVDNYPEYRKMHGNVTKHVTLVTEMSKIVEERKLMLVSQTEQELACNGGQGAAFEAVTNLLNNESISDIDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRTGDLYGNRDLMNIARNMARGLKGVENVYTQHQPLLFQIMESIVKGRLRDVDYPFIGNHFQQGRPQDVIIFIVGGTTYEESRSVALQNATNTGIRFILGGSSVLNSKRLFRDLEEAQRVSRSSTSVV 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02242 568 Gene3D - 154 554 IPR027482 -
Car05g02242 568 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 554 - -
Car05g02242 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Car05g02242 568 Pfam Sec1 family 22 552 IPR001619 GO:0016192
Car05g02242 568 Gene3D - 353 474 - -
Car05g02242 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 554 IPR001619 GO:0016192
Car05g02242 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Car05g02242 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Car05g02242 568 Gene3D - 3 128 IPR043154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02242 Car-Chr5 67631280 67637568 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02242 K12479 - gmx:100782786 1047.73