Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02235 ATGAGCCATCGAGGAATGGACCGCGACGAAGACGACGACGAAGAGTACGAAGAGGAGCAGGTCGCCGAATACGACGACGAGGAAGCGGATGAGGAAGTGGAGGAGAAAGGCGGTGGAAGGAAACGGAGACGATCTGGTTTCATCGACGATGACGCTGAAGAGGTGGACGAGGAGGAAGAGGAAGAGGATGACGACGACGATGATTATGACGCTGGTGGCCGAGGTACTCGTAAACGTAAGCAGTACAAAAGGGCTTCCGCTTCAAATTATTTCgacgaggaagccgaggttgatacggatgaagaggaggaagaggaagaAGGCGAAGACGGCTTCATTGATGAAACTGACGCTGATCTGCCGGAGGAAGATGACACTAGAGGTAGGTCACGCCCCCGACTGCCACCTCACCAAGAAGATCATGAAGATCTTGAAGCAATGGCAAGAAGTATACAAGAAAGATATGGAAAGCAGCGAGTAGCAGATTATGATGAAGAAACTACAGATGTAGAACAACAAGCACTTTTGCCATCTGTGAGAGATCCAAAACTGTGGATGGTCAAATGTGCGATTGGCCGTGAACGTGAAACAGCTGTTTGCCTCATGCAAAAGTACATAGATAAGGGGTCTGAATTGCAAATCCGATCAGCTGTTGCTCTTGATCATCTAAAAAACTATATATACGTGGAAGCAGATAAAGAAGCTCATGTTAGAGAGGCTTGCAAAGGTCTTCGCAATATATTTGGCCAAAAAATAACCCTTGTTCCAATAAGAGAAATGACTGATGTTCTTTCAGTTGAAAGCAAAGCAATTGATCTTGCTAGAGATACATGGGTCAGAATGAAGATTGGGACATACAAGGGGGACCTCGCCAAAGTAGTGGATGTTGATAATGTGCGACAGAGGGTTACTGTTAAATTAATTCCAAGAATAGACTTACAGGCTCTTGCAAACAAATTGGAAGGTAGAGAAGTTGTGAAAAAGAAAGCATTTGTTCCCCCTCCTCGTTTCATGAATGTTGATGAAGCTAGGGAACTACATATTCGCGTGGAGCATAGACGTGATGCCTATGGGGAACGGTTTGATGCCATTGGAGGTATGATGTTCAAAGATGGATTCTTATACAAAACTGTATCTATAAAATCCATCAGCGCCCAGAACATCAAACCTACGTTTGATGAACTCGAAAAATTTCGTAAACCGGGTGAGAGTGGAGATGGTGATGTAGTCAGTCTGTCAACTCTGTTTGCAAACAGAAAGAAAGGGCATTTCATGAAGGGTGATGCTGTTATTGTCATCAAGGGCGATTTGAAGAATTTGAAGGGATGGGTGGAGAAAGTGGATGAAGATAATGTTCATATAAGACCAGAAATAAAAGGTCTTCCTAAAACTCTTGCAGTAAATGAAAAGGAACTTTGTAAATATTTTGAACCTGGAAACCATGTTAAAGTTGTTTCTGGTGCTCAAGAGGGTGCTACTGGCATGGTTGTTAAGGTGGAGCAGCATGTCCTGATTTTAATATCTGATACTACAAAGGAGCATATCCGTGTTTTTGCAGATGATGTTGTAGAGAGCTCTGAAGTAACCACTGGAGTGACAAGAATTGGGGACTATGAACTTCGTGATCTTGTATTGCTAGACAATTTGAGTTTTGGTGTAATTATCCGTGTAGAAAGTGAGGCATTTCAGGTTCTTAAGGGGGTTCCTGACAGACCTGAAGTTGTGCTTGTTAAATTGAGAGAGATCAAGTGTAAGATAGATAAGAAAATAAGCGTGCAGGATAGGTTTAAAAATACAGTATCATCAAAAGATGTTGTGCGGATTGTTGAGGGTCCCTGCAAAGGCAAACAAGGTCCTGTGGAGCACATATATAGAGGAATATTGTTCATCTTTGATCGCCATCATCTTGAACATGCAGGATTTATATGTGCTAAGGCTCAATCGTGTGTAGTTGTGGGAGGTTCACGCTCCAATGGCGACAGAAATGGTGATGCATACTCCAGATTCCCCAGTCTTCGAACCCCACCTCGTATTCCACAGTCCCCAAAGAGGTTTCCTCGAGGAGGGCCTCCTTTTGATTCTGGAGGGAGGCATCGGGGAGGAAGGGGGCATGATGGTTTGTCTGGTGCAACTGTTAAAGTACGCCAGGGTCCCTATAAAGGTTATCGTGGACGTGTTATAGAAGTTAAAGGAACATTTGTTCGGGTTGAATTAGAGTCCCAAATGAAGGTTGTAACAGTTGACCGCAATCATATATCTGACAATGTGGCTGTTACCCCACACCGTGAAACATCTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCTTCTCGAACTCCTTTGCATCCATACATGACTCCGATGAGAGATCCTGGAGCAACACCAATTCATGATGGAATGAGGACCCCTATGCGTGACCGAGCTTGGAATCCTTATGCACCAATGAGTCCTCCTAGGGATAACTGGGAAGATGGAAATCCAGGCTCTTGGGGAGCCAGTCCACAGTACCAGCCAGGAAGCCCCCCTTCCCGGCCATATGAAGCCCCAACTCCTGGTGCTGGTTGGGCTAGTACTCCCGGTGGCAATTATAGTGAGGCTGGAACACCACGGGACAGTTCTGCCTACGGAAATGCTCCAAGCCCATATTTACCATCAACACCAGGTGGGCAGCCCATGACACCAAATTCTGCGTCTTATCTTCCTGGCACCCCTGGAGGACAGCCAATGACTCCAGGAACTGGTGGTTTGGACATGATGTCCCCAGTATTAGGTGGGGACAATGAAGGGCCTTGGCTTATGCCAGAAATATTGGTCAATGTACACAGAGCTGGAGATGAGTCTGTTGGAGTTATAAAAGAAGTTCTTCCGGATGGTTCTTACAAGGTAGCTCTTGGGTCCAGCGGAAATGGTGAAACCATAACGGCCCTTCATTCTGAAATGGAGGCTGTAGTGCCAAGAAAATCCGATAAAATAAAGATAATGGGCGGGGCGTTGCGTGGTGCCACTGGCAAGTTGATTGGTGTAGATGGCACTGATGGCATTGTAAAAGTAGATGACACATTGGATGTGAAGATTTTAGACTTGGTTATTTTGGCAAAATTAGCCCAACCATGA 3117 0.4453 MSHRGMDRDEDDDEEYEEEQVAEYDDEEADEEVEEKGGGRKRRRSGFIDDDAEEVDEEEEEEDDDDDDYDAGGRGTRKRKQYKRASASNYFDEEAEVDTDEEEEEEEGEDGFIDETDADLPEEDDTRGRSRPRLPPHQEDHEDLEAMARSIQERYGKQRVADYDEETTDVEQQALLPSVRDPKLWMVKCAIGRERETAVCLMQKYIDKGSELQIRSAVALDHLKNYIYVEADKEAHVREACKGLRNIFGQKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFMNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSISAQNIKPTFDELEKFRKPGESGDGDVVSLSTLFANRKKGHFMKGDAVIVIKGDLKNLKGWVEKVDEDNVHIRPEIKGLPKTLAVNEKELCKYFEPGNHVKVVSGAQEGATGMVVKVEQHVLILISDTTKEHIRVFADDVVESSEVTTGVTRIGDYELRDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKCKIDKKISVQDRFKNTVSSKDVVRIVEGPCKGKQGPVEHIYRGILFIFDRHHLEHAGFICAKAQSCVVVGGSRSNGDRNGDAYSRFPSLRTPPRIPQSPKRFPRGGPPFDSGGRHRGGRGHDGLSGATVKVRQGPYKGYRGRVIEVKGTFVRVELESQMKVVTVDRNHISDNVAVTPHRETSRYGMGSETPMHPSRTPLHPYMTPMRDPGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTPGAGWASTPGGNYSEAGTPRDSSAYGNAPSPYLPSTPGGQPMTPNSASYLPGTPGGQPMTPGTGGLDMMSPVLGGDNEGPWLMPEILVNVHRAGDESVGVIKEVLPDGSYKVALGSSGNGETITALHSEMEAVVPRKSDKIKIMGGALRGATGKLIGVDGTDGIVKVDDTLDVKILDLVILAKLAQP 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02235 1038 CDD KOW_Spt5_6 979 1036 IPR041980 -
Car05g02235 1038 MobiDBLite consensus disorder prediction 51 69 - -
Car05g02235 1038 MobiDBLite consensus disorder prediction 792 922 - -
Car05g02235 1038 Gene3D - 272 314 IPR014722 -
Car05g02235 1038 PANTHER SUPPRESSOR OF TY 5 28 1036 IPR039659 GO:0006357|GO:0032784
Car05g02235 1038 Pfam KOW motif 478 503 IPR005824 -
Car05g02235 1038 Gene3D - 478 527 IPR014722 -
Car05g02235 1038 SMART nusgn_4 181 267 IPR006645 GO:0140673
Car05g02235 1038 Pfam Spt5 transcription elongation factor, acidic N-terminal 90 177 IPR022581 -
Car05g02235 1038 SMART kow_9 599 626 IPR005824 -
Car05g02235 1038 SMART kow_9 475 502 IPR005824 -
Car05g02235 1038 SMART kow_9 705 732 IPR005824 -
Car05g02235 1038 SMART kow_9 272 299 IPR005824 -
Car05g02235 1038 SMART kow_9 423 450 IPR005824 -
Car05g02235 1038 SMART kow_9 985 1012 IPR005824 -
Car05g02235 1038 SUPERFAMILY Translation proteins SH3-like domain 416 454 IPR008991 -
Car05g02235 1038 MobiDBLite consensus disorder prediction 862 881 - -
Car05g02235 1038 MobiDBLite consensus disorder prediction 93 121 - -
Car05g02235 1038 CDD NGN_Euk 183 265 IPR039385 -
Car05g02235 1038 CDD KOW_Spt5_5 709 753 IPR041978 -
Car05g02235 1038 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 28 1036 - -
Car05g02235 1038 MobiDBLite consensus disorder prediction 1 143 - -
Car05g02235 1038 Gene3D - 163 265 IPR036735 GO:0006355
Car05g02235 1038 MobiDBLite consensus disorder prediction 10 33 - -
Car05g02235 1038 CDD KOW_Spt5_1 276 313 IPR041973 -
Car05g02235 1038 Gene3D - 692 755 IPR014722 -
Car05g02235 1038 PIRSF Spt5 2 1038 IPR017071 GO:0006357|GO:0032784
Car05g02235 1038 CDD KOW_Spt5_3 475 525 IPR041976 -
Car05g02235 1038 SUPERFAMILY Translation proteins SH3-like domain 467 526 IPR008991 -
Car05g02235 1038 ProSitePatterns Ribosomal protein L24 signature. 427 444 IPR005825 GO:0003735|GO:0005840|GO:0006412
Car05g02235 1038 CDD KOW_Spt5_2 424 474 IPR041975 -
Car05g02235 1038 MobiDBLite consensus disorder prediction 34 50 - -
Car05g02235 1038 MobiDBLite consensus disorder prediction 122 143 - -
Car05g02235 1038 Pfam Early transcription elongation factor of RNA pol II, NGN section 183 264 IPR005100 -
Car05g02235 1038 Gene3D - 418 475 IPR014722 -
Car05g02235 1038 MobiDBLite consensus disorder prediction 890 904 - -
Car05g02235 1038 MobiDBLite consensus disorder prediction 657 712 - -
Car05g02235 1038 CDD KOW_Spt5_4 603 645 IPR041977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02235 Car-Chr5 67569733 67577802 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02235 K15172 - gmx:100801380 1768.44