Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02218 ATGTACACATTTTTTAAGCAAACACACTCTCCTCACTCGTCACTTTCTTATTGTTCTTTTCTTCTACACCACTGTTTATCTCATAAGTCTCCTTACTTTCTCAAAACCGTGCATGCCCGTTTCCTCAAATTGGGTCTTAATACCTATACCTACTTGGGTAATCGCATTATTGATCTTTACACCGAGTTCGGCCACATTAATGATGCCTTGAAGGTGTTTGATGATATTTCTTACAAGAACTCCACGTCCTGGAACATTTGTTTGAAAGGGTTGGTCAAAAGTGGCCAGCTTGATAATGCCTGCCACATGTTTGATGAAATGCCTGTTAGAGATGTTGTTAGTTGGAACACCCTGATTTCGGGTTATGCTTCTTATGGATTTTCTAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAAGTACTGGTGTGAAACCAAGTTGGTTCACTTTCTCCATTTTAACATCGCTTGTATCAAGTCCTTGTCATGCTAAGCAGGTTCATGGTAGGATGATCAGAAGTGGAATGGATTTGTCTAATGTGGTGCTCGGAAATTCATTGATAGCTATGTATGGAAAGCTTGGTCTTGTTGATTATTCTTTTGATGTGTTTTTTACTATGAAGCAGCTTGATGTTATATCTTGGAACTCTCTGATGTGGGCCTGTTGTAGAGCTGATTGCCAAGAGCTGGCTCTAGAGCAGTTCTGTTACATGAGAGCTGCAGAGTTATTACCCGACCAGTTTACGTGTTCAATATTGATGAGTGTATGTTCTAACTTGCGAGATTTGGAAAAGGGTAAGCAAGTTTTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTATCAAGTGCTGCTATTGATCTCTTTTCCAAATGCAACAGATTGGAGGATGCTGTGCGGCTCTTTAAAGAACATGAACAATGGAATTCAGCTCTATGCAATTCCATGATTTCATGTTATGCTAGACATGACTTGGGAGAAGATGCTCTGCAACTTTTTGTGCTGACCTTGAGGAAGAATATCATGCCAACGGAATACACGGTTAGCTGTCTTCTGAGTTCTGTTACCATTTTCTTGCCAATAGAAGTGGGTAATCAAATCCATGCTTTGGTCCCTAAATTGGGTTTTGAGTCAGATACAGTTGTTGTCAGTTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGATGATGCCTTGAATATCTTCAATGAAATAAAAACAAAAGATTTGGTAACATGGAACACTATAATGATGGGACTCTCTTACAATGGAAAAGTGTCTGTGACCATAGACCTCTTCAAGGAATTGGTAAGAGAAGGAACACCACCTGATCAAATAACATTTGCCGCAGTTCTTCTAGCATGCAATTATGGGAATTTGGTTGATGAAGGAATTAAAATATTTTCCCTAATGGAGATGGAATTTGGAATAAAACCAGAGGAAGAACATTACTCATATGTTGTGGAAATGTTATGTAGAGCTGGTAAGCTCAAAGAAGCCATTGCCATCGTGAAAAAAATGTCGTACGGAACTACCCTCGACATATGGAGGTCAATTCTTTCTGCTTGTGCAGTACATGGAGATTTGCAAACTATTGAAATAATTGCAACGAAAATACTGGAGAGGGCACCAAAGACAACCTTACCTTACTTGGTATTGGCTCAGGCATATCAGATGAGAGGCAGATGGGAGAGCATGGTTCGAGTGAGGAAGGCTATGAAAAATAGAGGGACTAAAGAGTTCACTGGATGCAGTTGGGTTGGAATAAAAAACCATTTATATACTTTTGAATCAAATCAATTACAGCATTATGGTGGCAAGGATCTTTATCTGCTATTGAATTTACTGGCTTGGGAGATGGAGACTGAAGGATCTTTATCTGCTATTAATGCTGTGGACTGGATAAAATTTGTAATGCAGTAG 1932 0.3892 MYTFFKQTHSPHSSLSYCSFLLHHCLSHKSPYFLKTVHARFLKLGLNTYTYLGNRIIDLYTEFGHINDALKVFDDISYKNSTSWNICLKGLVKSGQLDNACHMFDEMPVRDVVSWNTLISGYASYGFSSHALELFVEMQSTGVKPSWFTFSILTSLVSSPCHAKQVHGRMIRSGMDLSNVVLGNSLIAMYGKLGLVDYSFDVFFTMKQLDVISWNSLMWACCRADCQELALEQFCYMRAAELLPDQFTCSILMSVCSNLRDLEKGKQVFAFCFKVGFVYNSIVSSAAIDLFSKCNRLEDAVRLFKEHEQWNSALCNSMISCYARHDLGEDALQLFVLTLRKNIMPTEYTVSCLLSSVTIFLPIEVGNQIHALVPKLGFESDTVVVSSLVDMYAKFGFIDDALNIFNEIKTKDLVTWNTIMMGLSYNGKVSVTIDLFKELVREGTPPDQITFAAVLLACNYGNLVDEGIKIFSLMEMEFGIKPEEEHYSYVVEMLCRAGKLKEAIAIVKKMSYGTTLDIWRSILSACAVHGDLQTIEIIATKILERAPKTTLPYLVLAQAYQMRGRWESMVRVRKAMKNRGTKEFTGCSWVGIKNHLYTFESNQLQHYGGKDLYLLLNLLAWEMETEGSLSAINAVDWIKFVMQ 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02218 643 PANTHER OS07G0578800 PROTEIN-RELATED 1 629 IPR045215 GO:0003723|GO:0009451
Car05g02218 643 Gene3D Tetratricopeptide repeat domain 275 358 IPR011990 GO:0005515
Car05g02218 643 Pfam PPR repeat 286 306 IPR002885 -
Car05g02218 643 Pfam PPR repeat 315 339 IPR002885 -
Car05g02218 643 Pfam PPR repeat 479 511 IPR002885 -
Car05g02218 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 110 IPR002885 -
Car05g02218 643 Gene3D Tetratricopeptide repeat domain 27 159 IPR011990 GO:0005515
Car05g02218 643 Gene3D Tetratricopeptide repeat domain 366 461 IPR011990 GO:0005515
Car05g02218 643 Pfam E motif 530 590 IPR046848 -
Car05g02218 643 PANTHER OS03G0435200 PROTEIN 1 629 - -
Car05g02218 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Car05g02218 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Car05g02218 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Car05g02218 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Car05g02218 643 Pfam PPR repeat family 110 153 IPR002885 -
Car05g02218 643 Pfam PPR repeat family 411 457 IPR002885 -
Car05g02218 643 Pfam PPR repeat family 210 256 IPR002885 -
Car05g02218 643 TIGRFAM PPR: pentatricopeptide repeat domain 113 147 IPR002885 -
Car05g02218 643 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Car05g02218 643 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Car05g02218 643 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Car05g02218 643 Gene3D Tetratricopeptide repeat domain 160 274 IPR011990 GO:0005515
Car05g02218 643 Gene3D Tetratricopeptide repeat domain 462 611 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02218 Car-Chr5 67404719 67406750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02218 97 627 Glycoside Hydrolase AT3G49170 31.540 5.57e-85 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02218 - - gmx:100819993 969.533