Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02217 ATGGAATTGCATGGCGTGTGCCGCACGCTTCGCGAAGCGAGACAACTCCACCTGTCGTTACTCAAAACTGGTACTCTGCATTCATCCGTCATCACCACCAACCGCCTTCTACAATTATACTCCCGCCGCGGCTCTCTTCAAGATGCATCCAAATTGTTCGACGAAATGCCGCAAACAAACCCTTTCTCGTGGACCACCCTCATCGAAGCTCACATCAACTCAGGCAACACACACAAATCACTGCAATTGTTTCACGCCATGCCCCACAAAACCCATTACTCATGGAACCTCCTCATTTCAACGTTTTCCAAATCTGGTCACCTTCAACTTGCTCACACTCTCTTCAACGCCATGCCTGTGAAGAATCCTCTTGTTTGGAATTCCATCATTCATGGTTATTCTCGACATGAGTATCCCAGAAAAGCTCTGTTACTCTTTAAGGAGATGAATTTGGACTCCTCAGAAACTGTCCACTGCGATGCGTTTGTGTTGTCAACTGTTTTCGGTGCATGTGCTGATTTGTTTGCTCTTGATTGTGGGAAACAAGTTCATGCACGTGTTTTCGTTGATGGTTTTGAATTCAAACTTGATAAGGTCTTGTGCAGTTCGATAGTTAATTTTTATGGGAAATGTGGCGATTTGGATAGTGCTGCTCGTGTTGTGGGTTCTGGGAATGAAGTTGATGACTTTTCTTTATCTGCTTTGGTATCAGGTTATGCAAATGCTGGTAGAATGAGAGATGCAAGAAGGGTTTTTGGTAACAAGGTTGATCCTTGTGCTGTGCTGTGGAATTCGATTATTTCGGGTTATGTCTTCAATGGTGAGGAAATGGAAGCATTGGCTCTCTTTAACATGATGCGTACGAATGGTGTTTGGGGAGACTTCTCTGCTGTTGCAAACGTTTTGAGTGCTGCTAGTAGCTTGCTCAATGTTGAACTTGTTAAGCAAATGCATGATCATGCTTGTAAAATTGGGGTGACTAGTGACATTGTGGTTGCTAGTGCTCTGCTTGGTGCATATTCTAAATGTAAACACCCTCATGAAGCTTGCAAGTTGTTTAGTGAGATCAAAGTCTATGATGCAATCTTGCTTAATACTATGATTACTGTGTACAGTAGTTGTGGAAGAATTGAAGATGCAAAGTGGATTTTTAACACGATGCCTAATAAAACATTGATTTCATGGAATTCAATTTTGGTTGGCCTCACTCAGAATGCGTGTCCAAGTGAGGCGTTGGATATTTTTTGTAGGATGAATAAGCTGGATGTGAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGCTAGTAAATCATCTCTTGAACTTGGTGAGCAGGTTTTTGGTAAAGCTATCACTTTGGGGCTTGAATCCGACCAAATCATTTCTACATCCCTTGTTGATTTTTATTGTAAATGTGGTCTTGTTGAGATGGGACGAAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTTTCATGGAATACAATGCTGATGGGATATGCAACAAATGGATATGGAATAGAAGCACTGAGGCTTTTTAATGAAATGAGGTATAGTGGTGTGAGGCCTTCTGCTATTACTTTTACCGGAGTTCTTTCAGCATGTGATCACTGTGGTCTGGTCGAAGAAGGAAGAAATCTGTTCCATACTATGAAGCATGAATATGATATAAATCCAGGGATTGAACATCACTCTTGCATGGTTGACCTCTTTGCCAGAGCTGGTTGTTTTGGGGAAGCAATGAATCTTATTGAAGAGATGCCTTTTCAGCCTGATGCAAACATGTGGTTATCGGTATTAAGAGGCTGCATATCCCATGGGAACAAGACTACTGGAAAGATGGCTGCAGAGCAAATTATTAAGCTGGATCCTGAAAATCCAGGTGCTTATATACAATTGTCTAATATACTTGCAACTTCTGAGGACTGGGAAGGATCAGCAGAAGTAAGAGAGTTGATGAGATATAAGAATGTTCAGAAGATTCCTGGTTGTAGCTGGACAGATTGTTGA 2019 0.4151 MELHGVCRTLREARQLHLSLLKTGTLHSSVITTNRLLQLYSRRGSLQDASKLFDEMPQTNPFSWTTLIEAHINSGNTHKSLQLFHAMPHKTHYSWNLLISTFSKSGHLQLAHTLFNAMPVKNPLVWNSIIHGYSRHEYPRKALLLFKEMNLDSSETVHCDAFVLSTVFGACADLFALDCGKQVHARVFVDGFEFKLDKVLCSSIVNFYGKCGDLDSAARVVGSGNEVDDFSLSALVSGYANAGRMRDARRVFGNKVDPCAVLWNSIISGYVFNGEEMEALALFNMMRTNGVWGDFSAVANVLSAASSLLNVELVKQMHDHACKIGVTSDIVVASALLGAYSKCKHPHEACKLFSEIKVYDAILLNTMITVYSSCGRIEDAKWIFNTMPNKTLISWNSILVGLTQNACPSEALDIFCRMNKLDVKMDKFSFASVISACASKSSLELGEQVFGKAITLGLESDQIISTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALRLFNEMRYSGVRPSAITFTGVLSACDHCGLVEEGRNLFHTMKHEYDINPGIEHHSCMVDLFARAGCFGEAMNLIEEMPFQPDANMWLSVLRGCISHGNKTTGKMAAEQIIKLDPENPGAYIQLSNILATSEDWEGSAEVRELMRYKNVQKIPGCSWTDC 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02217 672 Pfam PPR repeat 365 389 IPR002885 -
Car05g02217 672 Pfam PPR repeat 393 421 IPR002885 -
Car05g02217 672 Pfam PPR repeat 334 357 IPR002885 -
Car05g02217 672 Pfam PPR repeat 466 490 IPR002885 -
Car05g02217 672 Pfam PPR repeat 62 88 IPR002885 -
Car05g02217 672 Pfam PPR repeat 568 590 IPR002885 -
Car05g02217 672 Pfam PPR repeat 125 149 IPR002885 -
Car05g02217 672 Pfam PPR repeat 261 291 IPR002885 -
Car05g02217 672 Pfam PPR repeat 32 57 IPR002885 -
Car05g02217 672 Pfam PPR repeat 231 252 IPR002885 -
Car05g02217 672 Pfam PPR repeat 93 120 IPR002885 -
Car05g02217 672 Gene3D Tetratricopeptide repeat domain 293 391 IPR011990 GO:0005515
Car05g02217 672 SUPERFAMILY TPR-like 39 652 IPR011990 GO:0005515
Car05g02217 672 PANTHER OS07G0578800 PROTEIN-RELATED 10 672 IPR045215 GO:0003723|GO:0009451
Car05g02217 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Car05g02217 672 Pfam PPR repeat family 492 538 IPR002885 -
Car05g02217 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Car05g02217 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Car05g02217 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Car05g02217 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Car05g02217 672 Gene3D Tetratricopeptide repeat domain 1 152 IPR011990 GO:0005515
Car05g02217 672 Gene3D Tetratricopeptide repeat domain 393 536 IPR011990 GO:0005515
Car05g02217 672 Gene3D Tetratricopeptide repeat domain 153 291 IPR011990 GO:0005515
Car05g02217 672 PANTHER OS03G0849700 PROTEIN 10 672 - -
Car05g02217 672 Pfam E motif 609 670 IPR046848 -
Car05g02217 672 TIGRFAM PPR: pentatricopeptide repeat domain 125 149 IPR002885 -
Car05g02217 672 TIGRFAM PPR: pentatricopeptide repeat domain 261 291 IPR002885 -
Car05g02217 672 TIGRFAM PPR: pentatricopeptide repeat domain 393 426 IPR002885 -
Car05g02217 672 TIGRFAM PPR: pentatricopeptide repeat domain 494 527 IPR002885 -
Car05g02217 672 Gene3D Tetratricopeptide repeat domain 537 662 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02217 Car-Chr5 67401043 67403718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02217 8 671 Glycoside Hydrolase AT3G49170 29.577 8.47e-101 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02217 - - gmx:100790756 1068.14