Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02216 ATGAACTTAAACCCACGCGCCGCCGCCAGCACGACCAATGAAGTGATCAAATCAATCCTCAAGTCCCTAGAAGCGGGTCATATCCTAAAAGCCGCATCCACTCTCTTGGCGTTCCCACTACCATTCCCTTTCTCTCTCTACGCCCACTTCTTCCGTCATTGTTCTTCCCTAAAAGACATCGTCGCAGCCCGCAAGGTTCATTTCCACTTAACCACCACATCTCCCAACCCACCCACTTTCCTCCTCAACCGCGCCCTCGAAGCCTATGCTAAATGCTCCTCTCTTCGCGACGCTAGGGAACTGTTCGACGAAATGCCACAACGAGATGGTGGCTCCTGGAACGCCTTGATCACCGCTTATTCTCGATTGCGGTTTCCAAACGAAGCCCTTTCGTTGTTCCTTTCCATGAATAGGTCTAATGTTCGTGCAAATGAAGTTACCTTTGCAAGTGTTCTTGCTTCCTGTGCTGCTGTTTCTGAGCTTCCTCTCTCTCAACAGGTTCACGGGCTTGTTCTAAAATTTGGTTTTTGTGACAATGTGATAATTGGAAGTGCCTTTGTTGATGTTTATGCTAAATGCGGGGTTATGCTTGATGCTCGCAGGATGTTTGATGAAATTCCTCTTCGCAATGCTGTCACTTGGAATGTTATTGTGAGGCGGTATCTTGATGTTGGTGATGCAAAGGAAGCTGTTTTGATGTTCAAGCGTATGTTTTCAGCTAGAGTTAGGCCTTTGAATTTTACATTCTCTAATGCTCTTGTTGCTTGTTCCAGTAGGCATGCGCTTGAGGAGGGGATGCAAATTCACGGGGTTGTTGTGAAATGGGGACTCCATGAGGATAATGTTGTTTCGAGCTCACTTATCAAAATGTATGTCAAGTGTGGTGAATTGGAGAATGGTTCTAGGGTTTTTCATCAGCTTGGTTCAAAAGATTTGGTGTCATGGACTTGCATTGTGTCAGGGTATGCAATGAGTGGGAAAACTTGGGAGGCAAGAAAGCTTTTTGATGAGATGCCTGAACGAAATGTGATCTCATGGAATGCTATGTTGGCGGGGTATACTCGATTCTTTAAATGGTCTGAGGCATTAGATTTTGTTTGTTTAATGCTTGAGAATGTTATGGACGTGGATCATGTCACTCTTAGTTTGATGTTAAATGTGTCTGCGGGCCTTTCTGATCATGAAATGGGGAAACAGCTTCATGGTTATGTCTATCGACATCGTTTCCATTCAAACCTTATGGTCGGCAATGCCCTTCTTGACATGTATGGTAAATGTGGGAACTTGAACAGTGCCAGAGTTTGGTTTCACCTGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTATTGGCAAGCTGTGGTCATCATCATCTAAACGAGCAAGCACTAACAATGTTTTCAGAGATGCAATGGGAGACAAAACCAAGCAAGTATACTTTTGGAACCCTATTGGCAGCTTGTGCAAATACTTTTGCTCTCCGCCTTGGTAAACAAATTCACGGATTCATTATTAGACATGGATTTCAGATAGATACTATAATCACGACTGCTTTGATTTACATGTACTGTAAATGCTACAATCTTGAGTACGCTGTTGAGGTTCTGAAGGGGGCCGTTTCTAGGGATGTGATCATGTGGAATACCTTAATTTTGGGGTGTTGTCACAATCATAGGGGACGAGATGCACTTGAACTTTTTGGGATAATGGAAGCAGAAGGCATCAAACCAGACCATGTGACTTTTGAGGGCATTCTTCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACCCAATGCTTTAAGTCTATGAGCAATGAATACCATGtcgtgcctcggcttgagcattatgactccatgattgaactctacagtcggcatggttacatggatgagctcgagaattttatGAAAACTCTGAAAACAATGACAATAGAGCCTACTCTTTCCATGTTGGAAAGAGCCCTTGATGCTTGTCAGAAACATGAGTCCCCAAGATTTAAGGTGTACAAGGAGGAGTCTATTTTTCATGTTGCAATCATATGCAAAGAGGAAGGACAGACTGCACTTTTACCACAATATTGCCAATTGATAATGGCTTTGAGGGACAGTCTACCTCAAGTAACCAAAATTACCCAGATCCTTTGGTTTATAAACCGTTTTTCTCGCCTGCTGTTCCTTAGTGTGGGTCATCCACATCCTTCAAGGAATAGGATCATTGGGGAACCTGTGTTCTCCACCTTTGTGTTGTTTTCTCTCATTGAAAGACATTTTTGTTCTTCTCCCAGTATCTGCTATGGAGCTAAAGATAGTTGTATCTTCACCAATTACAAATATTCAGGTGAGCTCATCTGCAAGGTGGTGCTCTCAAAATGA 2382 0.4181 MNLNPRAAASTTNEVIKSILKSLEAGHILKAASTLLAFPLPFPFSLYAHFFRHCSSLKDIVAARKVHFHLTTTSPNPPTFLLNRALEAYAKCSSLRDARELFDEMPQRDGGSWNALITAYSRLRFPNEALSLFLSMNRSNVRANEVTFASVLASCAAVSELPLSQQVHGLVLKFGFCDNVIIGSAFVDVYAKCGVMLDARRMFDEIPLRNAVTWNVIVRRYLDVGDAKEAVLMFKRMFSARVRPLNFTFSNALVACSSRHALEEGMQIHGVVVKWGLHEDNVVSSSLIKMYVKCGELENGSRVFHQLGSKDLVSWTCIVSGYAMSGKTWEARKLFDEMPERNVISWNAMLAGYTRFFKWSEALDFVCLMLENVMDVDHVTLSLMLNVSAGLSDHEMGKQLHGYVYRHRFHSNLMVGNALLDMYGKCGNLNSARVWFHLMSNWRDRVSWNALLASCGHHHLNEQALTMFSEMQWETKPSKYTFGTLLAACANTFALRLGKQIHGFIIRHGFQIDTIITTALIYMYCKCYNLEYAVEVLKGAVSRDVIMWNTLILGCCHNHRGRDALELFGIMEAEGIKPDHVTFEGILLACVEEGLVEFGTQCFKSMSNEYHVVPRLEHYDSMIELYSRHGYMDELENFMKTLKTMTIEPTLSMLERALDACQKHESPRFKVYKEESIFHVAIICKEEGQTALLPQYCQLIMALRDSLPQVTKITQILWFINRFSRLLFLSVGHPHPSRNRIIGEPVFSTFVLFSLIERHFCSSPSICYGAKDSCIFTNYKYSGELICKVVLSK 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02216 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 143 IPR002885 -
Car05g02216 793 Pfam PPR repeat 112 141 IPR002885 -
Car05g02216 793 Pfam PPR repeat 285 310 IPR002885 -
Car05g02216 793 Pfam PPR repeat 344 372 IPR002885 -
Car05g02216 793 Pfam PPR repeat 417 440 IPR002885 -
Car05g02216 793 Pfam PPR repeat 212 239 IPR002885 -
Car05g02216 793 Pfam PPR repeat 618 640 IPR002885 -
Car05g02216 793 Pfam PPR repeat 313 343 IPR002885 -
Car05g02216 793 Pfam PPR repeat 86 108 IPR002885 -
Car05g02216 793 Pfam PPR repeat family 544 590 IPR002885 -
Car05g02216 793 Pfam PPR repeat family 444 491 IPR002885 -
Car05g02216 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 553 669 - -
Car05g02216 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 463 552 - -
Car05g02216 793 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 9 463 - -
Car05g02216 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Car05g02216 793 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 463 552 - -
Car05g02216 793 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 553 669 - -
Car05g02216 793 Gene3D Tetratricopeptide repeat domain 246 394 IPR011990 GO:0005515
Car05g02216 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Car05g02216 793 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Car05g02216 793 TIGRFAM PPR: pentatricopeptide repeat domain 313 343 IPR002885 -
Car05g02216 793 TIGRFAM PPR: pentatricopeptide repeat domain 212 244 IPR002885 -
Car05g02216 793 TIGRFAM PPR: pentatricopeptide repeat domain 112 144 IPR002885 -
Car05g02216 793 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Car05g02216 793 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 463 - -
Car05g02216 793 Gene3D Tetratricopeptide repeat domain 497 595 IPR011990 GO:0005515
Car05g02216 793 Gene3D Tetratricopeptide repeat domain 395 496 IPR011990 GO:0005515
Car05g02216 793 Gene3D Tetratricopeptide repeat domain 596 674 IPR011990 GO:0005515
Car05g02216 793 Gene3D Tetratricopeptide repeat domain 42 168 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02216 Car-Chr5 67394393 67399014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02216 7 666 Glycoside Hydrolase AT3G49170 27.083 1.12e-76 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02216 - - gmx:100775626 1012.68