LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car05g02209	ATGAGTATTGAGATTGAACAAGAGCACCCTAGTGTTGAACTTTCAAGAATTGCAATTTCTGAAACTCATGGAGAAAATTCTCCTTACTTTGCTGGATGGAAAGCCTATGATGAAGACCCTTATCATGAATTAACCAATCCATCTGGAGTTATTCAAATGGGCTTGGCTGAAAATCAAgtgtcatttgatttgcttGAAAAGTACTTGGAAGAAAACTCAGAGACATCAACATGGGGAAAAGGAGGTAGTAGTTTTAGAGAAAATGCATTGTTTCAAGACTATCATGGATTAAAATCATTCAGAAAAGCAATGGCAAGTTTCATGGAAAAAATAAGAGGAGAGAGAGCAAAATTTGATCCTGATAGAATAGTACTCACTGCTGGTGCTACTGCTGCTAATGAACTCTTAACATTCATCCTTGCAAATCCAGGAGATGCTTTACTTGTTCCAACTCCATACTATCCAGGATTTGATAGAGATTTAAGATGGAGAACAGGAGTAAACATAGTTCCAATCCATTGTGACAGCTCAAACAATTTTCAAATAACAGTTGAAGCATTAGAATCTGCATACAAAAATGCAGAATCAATGAACACAAAAGTAAAAGCAATACTAATAACAAATCCATCAAATCCATTAGGCATAACAATTCAAACTTCAGTCCTCGAATCGATACTAGACTTCGCGACTCGCAAGAACATACACCTAATATCAGATGAAATCTACTCAGGATCAGTTTTCTCATGTGATGAATTCACAAGCATAGCAACTGTACTCGAATCTCGGCGTTACAAAGACGCCGAGCGAGTTCACATTGTTTATAGTCTTTCAAAAGATCTTGGACTACCTGGTTTTCGAGTTGGAACAATTTATTCATACAATGATAAAGTTGTTACAACAGCTAGAAGAATGTCAAGTTTCACATTAATTTCATCACAAACACAACAACTTTTAGCATCAATGTTATCAGATGAAAAATTCACTGATAATTATATCAAAATAAACAGAGAAAGACTTAGAAAAAGATATGAAATGATAATTGAAGGTTTGAAAAATGCTAGAATTGAATGCTTGAAGGGTAATGCAGGATTATTCTGTTGGATGAATTTAAGTCCTATGATGGAAAATCAAACAAAAGAAGGTGAATTAAAAATATGGAATTCAATTTTACATGAAGTGAAGCTTAATATTTCACCAGGGTGTTCTTGTCATTGTTCTGAACCAGGTTGGTTTAGAGTTTGTTTTGCAAATATGACTCAACAAACTTTGGAAATTGCACTCAAAAGAATATGTGATTTCATGAATAATAAGGACACAAAGGATATACAAAGttaa	1335	0.3363	MSIEIEQEHPSVELSRIAISETHGENSPYFAGWKAYDEDPYHELTNPSGVIQMGLAENQVSFDLLEKYLEENSETSTWGKGGSSFRENALFQDYHGLKSFRKAMASFMEKIRGERAKFDPDRIVLTAGATAANELLTFILANPGDALLVPTPYYPGFDRDLRWRTGVNIVPIHCDSSNNFQITVEALESAYKNAESMNTKVKAILITNPSNPLGITIQTSVLESILDFATRKNIHLISDEIYSGSVFSCDEFTSIATVLESRRYKDAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRMSSFTLISSQTQQLLASMLSDEKFTDNYIKINRERLRKRYEMIIEGLKNARIECLKGNAGLFCWMNLSPMMENQTKEGELKIWNSILHEVKLNISPGCSCHCSEPGWFRVCFANMTQQTLEIALKRICDFMNNKDTKDIQS	444

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	53	79	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	85	101	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	122	142	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	144	165	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	198	222	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	234	257	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	269	293	-	-
	Car05g02209	444	PRINTS	1-aminocyclopropane-1-carboxylate synthase signature	301	324	-	-
	Car05g02209	444	Pfam	Aminotransferase class I and II	51	430	IPR004839	GO:0009058\|GO:0030170
	Car05g02209	444	SUPERFAMILY	PLP-dependent transferases	23	435	IPR015424	-
	Car05g02209	444	ProSitePatterns	Aminotransferases class-I pyridoxal-phosphate attachment site.	275	288	IPR004838	GO:0003824\|GO:0009058\|GO:0030170
	Car05g02209	444	Gene3D	-	73	324	IPR015421	GO:0003824
	Car05g02209	444	PANTHER	1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 7-LIKE	1	438	-	-
	Car05g02209	444	Gene3D	Aspartate Aminotransferase, domain 1	39	429	IPR015422	GO:0003824
	Car05g02209	444	PANTHER	BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED	1	438	-	-
	Car05g02209	444	CDD	AAT_like	86	430	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car05g02209	Car-Chr5	67349318	67351396	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car05g02209	K01762		-	gmx:100799562	754.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Car05g02209	05	67349318	67351396	Car05g02209	05	67349318	67351396	ECH