Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02197 ATGAAGCTTTCAAGCTCATGGTGTGCGAAACTTCCTGCAAATTGCATGAGTCTTCTTCGACCATTCATTAATCATTTTTCCCGTACACAGGACACAAATAGTGACGGTTTTGTAAGCCTTGAGGAGTTGAATTGGGTGCTTCAAAAGATAGGTAATAATAATTCTCAATTTAGCTTAGATGAGCTTGAATCTCTTGTGGAAAAGAAGAGTTTAGATTTCAATGAATTCTTGTTCTTTTACAACTCTATATCGAAGCAGAACATTGGAGAAAGCAGAGGAGGTGATGATGAATTGGAGAGGGACCTTGTGAAGACTTTTAATGTGTTTGATTTAGATGGAGATGGATTCATCACAAGCCAAGAACTTGAGTTTGTGTTGAAGACGCTTGGTTTCTTGGAGGAAACAACTGGTATGGATTGTGGAACTATGATTCATTTCTATGATACTAATTTGGATGGTAGGCTTGATTTTCAAGAATTTAAGAATATGATGTTGCCTACAATTAATGCATGA 513 0.3665 MKLSSSWCAKLPANCMSLLRPFINHFSRTQDTNSDGFVSLEELNWVLQKIGNNNSQFSLDELESLVEKKSLDFNEFLFFYNSISKQNIGESRGGDDELERDLVKTFNVFDLDGDGFITSQELEFVLKTLGFLEETTGMDCGTMIHFYDTNLDGRLDFQEFKNMMLPTINA 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02197 170 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 28 165 - -
Car05g02197 170 Gene3D - 84 169 - -
Car05g02197 170 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 28 165 - -
Car05g02197 170 CDD EFh 101 164 IPR002048 GO:0005509
Car05g02197 170 Gene3D - 24 81 - -
Car05g02197 170 ProSiteProfiles EF-hand calcium-binding domain profile. 31 53 IPR002048 GO:0005509
Car05g02197 170 ProSiteProfiles EF-hand calcium-binding domain profile. 97 132 IPR002048 GO:0005509
Car05g02197 170 SUPERFAMILY EF-hand 26 165 IPR011992 -
Car05g02197 170 ProSiteProfiles EF-hand calcium-binding domain profile. 135 170 IPR002048 GO:0005509
Car05g02197 170 Pfam EF hand 31 43 IPR002048 GO:0005509
Car05g02197 170 Pfam EF hand 147 164 IPR002048 GO:0005509
Car05g02197 170 Pfam EF hand 102 124 IPR002048 GO:0005509
Car05g02197 170 ProSitePatterns EF-hand calcium-binding domain. 110 122 IPR018247 -
Car05g02197 170 ProSitePatterns EF-hand calcium-binding domain. 31 43 IPR018247 -
Car05g02197 170 SMART efh_1 101 129 IPR002048 GO:0005509
Car05g02197 170 SMART efh_1 22 50 IPR002048 GO:0005509
Car05g02197 170 SMART efh_1 139 167 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02197 Car-Chr5 67218666 67219511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02197 28 167 EF-hand Containing Proteins AT1G21550 47.260 3.52e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02197 K13448 - gmx:100527117 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02197 05 67218666 67219511 Car05g02197 05 67218666 67219511 ECH