Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02185 ATGGCCACGCTCTCACACCCGTTCCCACCGTTCTTCTCCGTTCAGAGAACCACTTCAACCCACCCCAATGCATCCTCCTTCATTCGACCTCCTCCTTCCTTCACACGCCGTCGTTTCACACCCCGTCGTTTCACACCCTTATTTGTTTCCATCCCTTCCATTAAGGAAAATCTTGGTCGCATTCAAAAGACTTTCACTGACTTCACCAGCTTGAACCATTGGGTCGTTAGCGACTACTACCGTCTCGTGAACTCCGTCAATGCTTTTGAGTCTCGGATTCAGGCGCTCTCTGACGACCAGTTAGCTGCCAAAACAGAGGAGTTTCGCCGCCGGCTTGCCCGAGGGGAGACATTAGCTGATATCCAAGCTGAGGCGTTTGCTGTTGTTCGTGAGGCTGCGAGAAGAAAACTTGGAATGCGTCACTTTGATGTTCAGATTATTGGTGGAGCTGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACTGGGGAGGGAAAAACCTTAGTTTCCACGCTTGCAGCATATCTTAATGCCCTGACTTCTGAGGGTGTCCATGTCGTGACTGTCAACGATTATTTAGCTCAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGAATTCTGAAGAGCGGAGATTCAATTATAGATGTGATATAACATATACCAATAATTCGGAGCTTGGTTTTGATTACTTGAGAGATAATCTTGCTGGAAATAGCAAACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCTATTGTTGATGAGGTGGATTCAGTCCTGATAGATGAGGGAAGAAATCCATTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGGTATCCTGTTGCTGCAAAAGTGGCCGAATTGCTTATACAGGGCATTCATTACAAAGTGGAACTAAAAAATAATTCGGTGGAGTTGACTGAGGAGGGAATTACTCTTGCGGAAATGGCTCTTGAAACACATGACCTTTGGGATGAAAATGATCCTTGGGCTAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTTCAATACATGGTCAGAGATGGAAAGGCTTTAATTATAAATGAGCTGACAGGAAGAGTTGAAGATAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTAGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTCGTGGCTCAGATCACATACCAGTCATTATTCAAGCTTTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCAGACGCCGGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGCAAAGATTTGCCTATTCAGGCATTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTGGAGAAGGACGTCCTGTCTTAGTTGGGACAACTAGTGTAGAAAATTCCGAACTTTTGGCTGGTCTGCTTAGGGAATGGAATATTCCCCATAATGTTTTGAATGCTCGACCCAAGTATGCTGCGAGAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACAATATCTACAAATATGGCAGGCAGGGGCACAGATATAATTCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGACAGTGTACTTCCTTTTTTGACACGGGAGGATCCAAATATTGAACTTGCTGGCGAGGCCATTTCAGATAAAGTGCTTCCAAAGATAAAGGTGGGATCATCATCATTAGCCTTACTGGCTAAGACAGCCTTAATGGCAAAATATGTATCAAAAAGTGAGGGTAAAAGTTGGACATATCAGAAAGCTATATCTTTTATCTTGGAAGCTATTGAAATGAGTCTTTCATATAGTTTGGAAGAGCTGGAGAAGCTGGCCAATGAAGAATCTGAGATCTACCCCCTTGGTCCTACAGTGGCACTTGCCTATCTGTCAGTTTTAAAGGATTGTGAAGAACACTGTTTGCATGAAGGGTCTGAGGTAAAAAGGCTTGGTGGCCTTCATGTGATTGGTACATCTTTACACGAGTCCCGGAGAATAGACAACCAGCTTCGTGGCAGAGCAGGAAGGCAGGGGGATCCGGGGTCAACGCGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCTGTTAGACTTATCTCAAAGATTACAGACGACGAGGATCTGCCAATTGAGGGTGATGTCATTGTGAAACAGCTCTTGGCATTGCAAATCAATGCAGAAAAGTTCTTCTTCGGTATAAGAAAGAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAACGAAAACATGTTTATGATCTAAGGCAGCTAATCTTAACAGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTAGTGGATGAGGTTGTCTTCAGTAACATTGATCCATTGAAGCATCCACGTAGTTGGGGTTTGAGTAATCTCTTGAAAGAGTTTAAGACAATCGGTGGAAAGCTGTTGCATGAATCATTTGGAGGGATTAATGATGACACTTTACTAAATTCACTTAGGCAACTGAATGAAGTGAATTCAGTTGATGTTGTCAATTTTTGCCTTCCAAATTTGCCAGCACCTCCAAATGCTTTCAGGGGAATTCGCAGGAAGAGCTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGAGACCGGGAAGTATCGCACAACATCTAATCTCCTTCGCAAGTATCTTGGAGATTTTCTAATCGCTTCATATTTAGAGGTTGTTGAAGAGTCTGGCTATGATGATAGACATGTAAAAGAGATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAACGTTAGGAGCTTTGGCCACAGAAATCCTCTAGAAGAATACAAAATTGATGGTTGTCGGTTTTTCATCTCGATGCTCAGTGCAACTCGAAGATTAACTGTAGAAGCACTCTTACGGCATTGGACGTCTCCAATGGAATCCCAAGAATTATTTTTATAA 3153 0.4288 MATLSHPFPPFFSVQRTTSTHPNASSFIRPPPSFTRRRFTPRRFTPLFVSIPSIKENLGRIQKTFTDFTSLNHWVVSDYYRLVNSVNAFESRIQALSDDQLAAKTEEFRRRLARGETLADIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSEERRFNYRCDITYTNNSELGFDYLRDNLAGNSKQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLIQGIHYKVELKNNSVELTEEGITLAEMALETHDLWDENDPWARFVMNALKAKEFYRRDVQYMVRDGKALIINELTGRVEDKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQTPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFGEGRPVLVGTTSVENSELLAGLLREWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVLPFLTREDPNIELAGEAISDKVLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAISFILEAIEMSLSYSLEELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITDDEDLPIEGDVIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEVVFSNIDPLKHPRSWGLSNLLKEFKTIGGKLLHESFGGINDDTLLNSLRQLNEVNSVDVVNFCLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIETGKYRTTSNLLRKYLGDFLIASYLEVVEESGYDDRHVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRHWTSPMESQELFL 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02185 1050 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 147 310 IPR014001 -
Car05g02185 1050 CDD SF2_C_secA 462 733 IPR044722 -
Car05g02185 1050 Gene3D Helical scaffold and wing domains of SecA 768 887 - -
Car05g02185 1050 TIGRFAM secA: preprotein translocase, SecA subunit 86 860 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 SUPERFAMILY Pre-protein crosslinking domain of SecA 288 409 IPR036670 GO:0016020|GO:0017038
Car05g02185 1050 PRINTS SecA protein signature 121 145 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 PRINTS SecA protein signature 159 173 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 PRINTS SecA protein signature 175 185 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 PRINTS SecA protein signature 228 248 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 PRINTS SecA protein signature 381 403 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 PRINTS SecA protein signature 418 435 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 PRINTS SecA protein signature 455 468 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 CDD DEXDc_SecA 100 456 - -
Car05g02185 1050 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 56 1049 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 MobiDBLite consensus disorder prediction 15 34 - -
Car05g02185 1050 SMART SecA_DEAD_2 65 444 IPR011115 GO:0005524|GO:0016020|GO:0017038
Car05g02185 1050 Gene3D - 459 765 IPR027417 -
Car05g02185 1050 SUPERFAMILY Helical scaffold and wing domains of SecA 768 1038 IPR036266 -
Car05g02185 1050 MobiDBLite consensus disorder prediction 15 30 - -
Car05g02185 1050 ProSiteProfiles SecA family profile. 61 765 IPR014018 -
Car05g02185 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 457 IPR027417 -
Car05g02185 1050 Pfam SecA preprotein cross-linking domain 296 400 IPR011130 GO:0016020|GO:0017038
Car05g02185 1050 Hamap Protein translocase subunit SecA [secA]. 60 1041 IPR000185 GO:0005524|GO:0006605|GO:0006886
Car05g02185 1050 Gene3D - 290 410 - -
Car05g02185 1050 Pfam SecA Wing and Scaffold domain 763 1037 IPR011116 GO:0016020|GO:0017038
Car05g02185 1050 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 459 746 IPR027417 -
Car05g02185 1050 Gene3D Helical scaffold and wing domains of SecA 910 1038 - -
Car05g02185 1050 SMART SecA_PP_bind_2 289 400 IPR011130 GO:0016020|GO:0017038
Car05g02185 1050 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 56 1049 - -
Car05g02185 1050 Pfam SecA DEAD-like domain 71 443 IPR011115 GO:0005524|GO:0016020|GO:0017038
Car05g02185 1050 ProSitePatterns SecA family signature. 544 559 IPR020937 GO:0006605|GO:0006886|GO:0016020
Car05g02185 1050 Gene3D - 80 457 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02185 Car-Chr5 67082022 67096323 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02185 K03070 - gmx:100793437 1824.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02185 05 67082022 67096323 Car05g02185 05 67082022 67096323 ECH