Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02184 ATGGAGTTGCCGGAATGTCCGGTGTGTCTTCAAAACTACGACGACGAAAACGCGATTCCTCGAGTACTATCATGCGGCCACACGGTTTGTGAAATTTGTCTTGTGGAGCTTCCGCCGCGATTTCCAAACACGATTCGTTGTCCAGCGTGTACTCAACTCGTTAATTACTCACCCAAACAAGGCCCTTCTTCTCTTCCTAAAAACATCGACCTCCTCAGGCTCTGCCTTCAACAACAACAACACTCTTCATATTCTAATCAATCGCGGAAATCGAATCAACGGTCCACGATCAACGATGACTATTCATCTCGATTTTGGTCTGACGAGTTCTACGTTGCTTGGAAGGATTGGATTCTTCCGTACGACGCCGTTTCTGTCGACGAGCACGGTATTGGTAGGTTTAATTATTCGTCCAAAGGTAGGGTTTGCTTCGGAGTTAATCTTACGGTGAATCTCGCTCCAATTGTTTCTTTGCCTCCGGTTAGCGATTCAAAGTTCAAGTTTAGTTATGTTGCTTGGGTTATTAAGTGTTTAGAAGGGATGAACGAGGGTTCGAGGGAAGGTTTAGGTTTGATTCTAGAAGCTTCTGTGAGGCAGTGTAGGTTGTGTAGGGTTTATGGGATTTGGAGCGAGGTTGTTGATGGTACTTTGTATTTGGTTTGTGAGAGGCAATGTGGTAGGGTTTTGGATAAGTTTGGTGGATTGAGGAATGGGTTTCTTGGTTTGAATGGGGATGATTTGAAATTGGGTAATGGCGGGGTTTGTAGTTTTGCAATGATTGCTAAGGGTATATGTGAAGCTGTGATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGTTGTTTGGGACTTTCCTGTTTCTCTTTTGACGAGCTTGGTGGTGTTTGTATTGATTTGAACGAGGTGTTGGTGAAGGGAAAGAAGATTATGGATGAGGTTTCTGGTGGCGTGGGTGATGAGTGCGAAGCGATGTGTAAGAATTGTTTGGATAATGAGCTTTTCATTAGCCTGGAGGTTTTGGCGAAGTTCTTGCACAAGGGGGTTACTAATCCACAGAGTGGGAATTTGAGATATCCGATTGGGTATGGCTCAGATGTGTGGTCGTTGGCTTGTGTGTTGCTGCAGCTTCTTATTGGAAATTCACTCCCCTGGATTACTTTGGAAACGAGTGAAGAGAATAGCCTTGACATCTCGGCTAGTTACGTGTCTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGATAAAATTGGCTCTGAATACCAATCACTTAAGCAGACTCTTTGCAAATGTTTGGACATCAATCCGGAAAGTCGTCCAAATGTGGTGGATGTAAGGAAATGCATTCAGGACGTGTTGGTCAAACATCAATTTATTTTTTTGGGCGATTTGGAGGTCACAGTAATCAGGAACAACACTGGTGACCCTGTGATTCTTGTCGAGTTGTGTCAGTTGCCTGAGGCAAGTTCTAAGGAGCCGAGAGGACCTGAGTTGCAGTTGAAAGAAGACGACGGTCAACCTGATTTCCTTCAAGGTGTGGAAAACAAATGTGATGAAGACTTTGTTTCTAGCTTATCTAAGGGAATGGCCGAGCTTAAAGATCTGCAAGGCCATCTTGGGTGTATAACTGGATTAGCTGTGGGAGGGGGATATTTGTTTAGCTCCTCTTTTGATAAAACTGTTCGTGTATGGTCCTTACAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGTATAAGTGGTGACGGTGGAGGGGGTATATTTGTCTGGGGGATTGCTGCACCTTTTACTCAAGATCCCTTGAGGAAATGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCATTCCTTAGCTGTTTTCAGAAATCTTTTTCTCTACACGGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGATGGAACTTTGATGTGCACAATGAGTGGTCACAAATCTGTAGTTTCCACACTTTCAGTATGCGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATCCGCTTGTGGAGTCTTAATGATCATAGCCCGTTGACGGTTTTAGGGGAAGATATGCTTGGAGAGATGAAGTCTATCCTGGCCATTACGGCCAATAGGCATTTGCTTGTTGCAGCATATGAAAATGGATGCATAAAGGTCTGGAGAAATGATGTGTTCATGAATACCAAAACATTGCACAATGGTGCCATTTTTGCGATGAGTATGCAGGGAAAATGTCTTTATACAGGAGGTTGGGACAAAAATGTTAATATACAGGAATTATCTGGAGATGAGTTAGAACTGGATGTCAAAGCATTTGGATCATTTCCTTCCAGTTCTGTTGTGACCGCTATATTATGCAGCGAAGGAAAACTATATGTTGGGTATGCTGACAAGTCTATCAAGGTTTATCGTGCTAAAAAGTAA 2475 0.4299 MELPECPVCLQNYDDENAIPRVLSCGHTVCEICLVELPPRFPNTIRCPACTQLVNYSPKQGPSSLPKNIDLLRLCLQQQQHSSYSNQSRKSNQRSTINDDYSSRFWSDEFYVAWKDWILPYDAVSVDEHGIGRFNYSSKGRVCFGVNLTVNLAPIVSLPPVSDSKFKFSYVAWVIKCLEGMNEGSREGLGLILEASVRQCRLCRVYGIWSEVVDGTLYLVCERQCGRVLDKFGGLRNGFLGLNGDDLKLGNGGVCSFAMIAKGICEAVIALNLEGLVAGCLGLSCFSFDELGGVCIDLNEVLVKGKKIMDEVSGGVGDECEAMCKNCLDNELFISLEVLAKFLHKGVTNPQSGNLRYPIGYGSDVWSLACVLLQLLIGNSLPWITLETSEENSLDISASYVSWVEKVSSVLEDKIGSEYQSLKQTLCKCLDINPESRPNVVDVRKCIQDVLVKHQFIFLGDLEVTVIRNNTGDPVILVELCQLPEASSKEPRGPELQLKEDDGQPDFLQGVENKCDEDFVSSLSKGMAELKDLQGHLGCITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDGGGGIFVWGIAAPFTQDPLRKWYEQKDWRFSGIHSLAVFRNLFLYTGSGDRTIKAWSLKDGTLMCTMSGHKSVVSTLSVCDEVLYSGSWDGTIRLWSLNDHSPLTVLGEDMLGEMKSILAITANRHLLVAAYENGCIKVWRNDVFMNTKTLHNGAIFAMSMQGKCLYTGGWDKNVNIQELSGDELELDVKAFGSFPSSSVVTAILCSEGKLYVGYADKSIKVYRAKK 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02184 824 Gene3D - 514 610 IPR015943 GO:0005515
Car05g02184 824 SUPERFAMILY WD40 repeat-like 528 822 IPR036322 GO:0005515
Car05g02184 824 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Car05g02184 824 PRINTS G protein beta WD-40 repeat signature 550 564 IPR020472 -
Car05g02184 824 PRINTS G protein beta WD-40 repeat signature 641 655 IPR020472 -
Car05g02184 824 PRINTS G protein beta WD-40 repeat signature 681 695 IPR020472 -
Car05g02184 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
Car05g02184 824 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 2 820 - -
Car05g02184 824 Gene3D Transferase(Phosphotransferase) domain 1 318 457 - -
Car05g02184 824 Gene3D - 612 824 IPR015943 GO:0005515
Car05g02184 824 PANTHER - 2 820 IPR044715 -
Car05g02184 824 SUPERFAMILY Protein kinase-like (PK-like) 202 456 IPR011009 -
Car05g02184 824 SMART WD40_4 657 694 IPR001680 GO:0005515
Car05g02184 824 SMART WD40_4 697 738 IPR001680 GO:0005515
Car05g02184 824 SMART WD40_4 785 821 IPR001680 GO:0005515
Car05g02184 824 SMART WD40_4 526 563 IPR001680 GO:0005515
Car05g02184 824 SMART WD40_4 566 606 IPR001680 GO:0005515
Car05g02184 824 SMART WD40_4 739 776 IPR001680 GO:0005515
Car05g02184 824 SMART WD40_4 612 654 IPR001680 GO:0005515
Car05g02184 824 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 664 696 - -
Car05g02184 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 703 IPR001680 GO:0005515
Car05g02184 824 SUPERFAMILY RING/U-box 5 59 - -
Car05g02184 824 Pfam RING-type zinc-finger 6 48 IPR027370 -
Car05g02184 824 Pfam WD domain, G-beta repeat 660 694 IPR001680 GO:0005515
Car05g02184 824 Pfam WD domain, G-beta repeat 530 563 IPR001680 GO:0005515
Car05g02184 824 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Car05g02184 824 CDD RING-HC_TRIM32_C-VII 5 51 - -
Car05g02184 824 ProSiteProfiles Trp-Asp (WD) repeats profile. 533 572 IPR001680 GO:0005515
Car05g02184 824 SMART ring_2 6 50 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02184 Car-Chr5 67072636 67081207 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02184 548 741 Acyl Lipid Metabolism Gene Families AT3G18860 29.353 2.78e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02184 - K03070 lja:Lj1g3v0874380.1 1191.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02184 05 67072636 67081207 Car05g02184 05 67072636 67081207 ECH