Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02170 ATGCCAGCTTCTCCTTCAGAAAACCGAACCAAATGGAGGAAGAGGAAGAGAGAATCGCAAATCACAAGGCGTCAACagaagcacgaggaagaagaagaagacgaagaagaaaaccccaatgcagaagaagaCCACGACCGTGACTACGATTCTGAGGACCAAAACCACCCTAATTCCCAACCGCAACAAGAAATTGAGGTCCTCTCCGATCACGGTGTTCAGATTTCTCAGTTTCCGATGGTGATTAAGCGTGCCGTTAACCGTCCACATTCCTCTGTGACTGCAATTGTTGCTCTTGAACGAGCTATGGAGTTGGGAGATAGCAAGGGTCAGCTTCAGAGCCCTCCGTTTTTGGAGAATGTGTCTCATGGCCAGCTTCAAGCGCTTTCGTTTGTTCCATCTGATAGTCTCGCTTTGGATCAGGATCGCAATGATTCCTCTTATGTTATCACTCCACCACCAATTTTGGAAGGAAGTGGCGTTGTTAAGCACTTTGGAAATAGGGTTCTTGTGCTTCCAATGCATTCAGATTGGTTTTCACCTGGAACTGTGCATCGACTGGAGAGACAAGCAGTGCCTCATTTCTTTTCAGGGAAGTCGCAGGATCTAACTCCTGAAAAGTACATGGAATGCAGGAACTATATTGTTGCATTATACATGGAGGACCTGGGGAAGAGGATTGCTGCCTCTGATTGCCAGGGATTGATGGTTGGGGTTGATCATGAGGATTTGACTCGAATTGTTCGGTTCCTTGACCACTGGGGAATTATCAATTATTGTGCCCGAATGCGAAGTCATGAGCCTCCAAATGCTGTGTCCTGCCTGAAGGAGGACACTGGTGGAGAGGTCCGTGTGCCATCAGAGGCCTTGAAGTCCATAGATAGTTTGATCAAATTTGATAAGCCCAACTGTAAGCTCAAAGCGGAAGAAATTTATTCACCATTGACGACACATAGTGCTGATGTCCCTGACCTTGACGGAAGAATAAGGGAGCATCTGTCTGAAAATCATTGCAATTATTGTTCTTGTCCTCTTCCTGCTGTATACTATCAATCTCAAAAAGAGGTTGATATTTTACTCTGTACTGATTGCTTTCATGACGGGAAATTTGTCATTGGTCATTCAAGTATAGATTTTATAAGGGTGGATTCCACAAGAGATTATGGCGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGTTGCTTCTTGAAGCAATGGAGATTTACAATGAGAATTGGAATGAAATTGCCGAGCACGTTGGCACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGGAAATTAGAAAATATCAACGTTCCAAACATGTCTTTGTCATCCAATGTGATGAATAAAGATGATAATGGAAGATCACATCACCACTCAAACGGAGATTCTGCAGGATCTGTCCATCAAATCAGAGACTCTGACAGCCGCCTGCCTTTTGCTAATTCTGGAAATCCTGTCATGGCTCTGGTTGCCTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCAGCTTCTGCTGCTCATGCAGCATTATTAGTATTGTCAGACGATAATACTGGCTCGCAGACGGAAGCATCAGGACATGATAATAGGACAAATCCAGAAAATGTACATTGTAGAGATGGTGGCTCTCGTGGAGAAACTGCAATTTCAAATAATCATAATGAGGATAAGGCAAAAGCACTTTGTTCGCGAGATCAAAATGAGGGTAGGACAACCCCACTCTCTGCTGAAAAAGTTAAAGACGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAACGGGAAATTCAGAGATTATGTGCTAATATAATTAATCATCAGTTGAAAAGATTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAGGAATGCGAGCAAGTGGAAAGGGCGAAACAGAGGTTTGCTGCTGAACGCTCCCGCATCATATCAGCACGTTTTGGAACTGCGGGAACCCCGCCTCCAATGAGTGCATCAGGTGTTGGTCCTTCAATGGCAAGTAATGGCAATAATAGGCAACAAATGATCTCTGCCTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAACAACCAACCAGTTCATCCACACATGTCTTTTGCCCAAAGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAACAATCACAATCAACTTCTTCAACTGCCATGTTCAATGCCCCTGGTAATGCGCAGCATGCTGCTAATCATCCACTGTTGAGGCCTGTGTCAGGAACTAATTCTGGTTTAGGATAA 2346 0.4322 MPASPSENRTKWRKRKRESQITRRQQKHEEEEEDEEENPNAEEDHDRDYDSEDQNHPNSQPQQEIEVLSDHGVQISQFPMVIKRAVNRPHSSVTAIVALERAMELGDSKGQLQSPPFLENVSHGQLQALSFVPSDSLALDQDRNDSSYVITPPPILEGSGVVKHFGNRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKSQDLTPEKYMECRNYIVALYMEDLGKRIAASDCQGLMVGVDHEDLTRIVRFLDHWGIINYCARMRSHEPPNAVSCLKEDTGGEVRVPSEALKSIDSLIKFDKPNCKLKAEEIYSPLTTHSADVPDLDGRIREHLSENHCNYCSCPLPAVYYQSQKEVDILLCTDCFHDGKFVIGHSSIDFIRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPNMSLSSNVMNKDDNGRSHHHSNGDSAGSVHQIRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASAAHAALLVLSDDNTGSQTEASGHDNRTNPENVHCRDGGSRGETAISNNHNEDKAKALCSRDQNEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERSRIISARFGTAGTPPPMSASGVGPSMASNGNNRQQMISASPSQPSISGYGNNQPVHPHMSFAQRPSMFGLGQRLPLSMIQQSQSTSSTAMFNAPGNAQHAANHPLLRPVSGTNSGLG 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02170 781 MobiDBLite consensus disorder prediction 672 708 - -
Car05g02170 781 Coils Coil 18 44 - -
Car05g02170 781 Pfam Myb-like DNA-binding domain 395 437 IPR001005 -
Car05g02170 781 SUPERFAMILY Homeodomain-like 393 447 IPR009057 -
Car05g02170 781 SMART sant 392 440 IPR001005 -
Car05g02170 781 MobiDBLite consensus disorder prediction 529 567 - -
Car05g02170 781 Pfam SWIRM domain 173 259 IPR007526 GO:0005515
Car05g02170 781 MobiDBLite consensus disorder prediction 686 708 - -
Car05g02170 781 PANTHER SWI/SNF COMPLEX-RELATED 55 780 - -
Car05g02170 781 MobiDBLite consensus disorder prediction 744 759 - -
Car05g02170 781 MobiDBLite consensus disorder prediction 744 781 - -
Car05g02170 781 Gene3D - 176 263 IPR036388 -
Car05g02170 781 ProSiteProfiles Zinc finger ZZ-type profile. 333 387 IPR000433 GO:0008270
Car05g02170 781 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 55 780 - -
Car05g02170 781 ProSiteProfiles SANT domain profile. 391 442 IPR017884 -
Car05g02170 781 ProSiteProfiles Myb-like domain profile. 395 438 IPR001005 -
Car05g02170 781 CDD SANT 395 437 IPR001005 -
Car05g02170 781 MobiDBLite consensus disorder prediction 1 64 - -
Car05g02170 781 ProSiteProfiles SWIRM domain profile. 170 268 IPR007526 GO:0005515
Car05g02170 781 MobiDBLite consensus disorder prediction 455 481 - -
Car05g02170 781 Gene3D - 392 442 - -
Car05g02170 781 Pfam SWIRM-associated region 1 597 672 IPR032451 -
Car05g02170 781 SUPERFAMILY Homeodomain-like 169 266 IPR009057 -
Car05g02170 781 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02170 Car-Chr5 66961838 66969596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02170 338 434 EF-hand Containing Proteins AT3G07740 33.962 7.62e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02170 K11649 - gmx:100780440 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02170 05 66961838 66969596 Car05g02170 05 66961838 66969596 ECH