Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02161 ATGCTCTTTCTACTCCCACACACTTTCTCCCTACATAAAACCCCTCTCATTCCTTTGTTCTTCGAAATCCCTAAAATTTCAAAACATTCTACAATGGCTAAAACCGTTTCGATTTTGTTCCTCTTTGGATTATCGCTCTCTCTCCTTGTGCTGCTTCCTTCTCAGATCTCCGCTGAGGAATCTGAGGCAAAGGAATATGTCCTTACATTGGACAACTCTAACTTCCATGACACTGTTAGCAAGCACGATTTCATCGTTGTTGAGTTTTACGCACCTTGGTGTGGCCACTGTAAGAACCTTGCACCTGAGTATGAAAAAGCTGCTTCTATCTTGAGCAGCCATAATCCTCCAATTTTTTTGGCTAAAGTTGATGCCAATGAGGAGAAGAACAAAGAAATCGCTACACAGTATGAAGTTAAGGGATTCCCAACAATTAAAATTTTGAGAAATGGTGGAAAGAAAATTCAAGATTACAAAGGTCCCCGTGAAGCTGATGGTATTGTCGAATATGTGAAGAAACAAAGCGGTCCTGCATCAACAGAAATTAAATCTGCTGATGATGCTAGTGCTTTTATTGGTGAAAAGAGTGTTGTTATTGTCGGCGTTTTCCCTAAATTCTCTGGTGAGGAGTTTGATAAGTTCATCGCAGTAGCCGAGAAGTTGCGTTCTGATTATGACTTTGGTCATACTCTGGATGCCAAACACCTCCCAAGGGGAGATTCATCAGTGTCTGGCCCTGTTGTTAGGTTATTTAAGCCATTTGACGAGCTCTTTGTAGACTCCAAGGATTTCAATGTTGAAGCACTAGAAAAATTCATTGAAGAATCCAGCATCCCCGTTGTGACTGTCTTTAACAATGACCCAAGCAATCACCCTTATGTTTCAAAATTCTTTAACTCTCCCAATGCAAAGGCAATGTTGTTCCTCAACTTCAGTGCTGAAGGTGCTGAACCTATCAAATCAAAATACAGTGAAGTTGCTGAGCAATACAAACAACAGGGAGTAAGCTTTCTTGTGGGAGATGTTGAGGCCAGTCAAGGTGCCTTCCAGTACTTTGGACTCAAGGAAGACCAAGTACCTCTAATTATTGTTCAGAATACTGATGGGAAGAAATTTTTCAAACCCAATTTGGAAGCTGATGATGTTCCAACTTGGTTGAAGGCATACAAGGAGGGAACTCTTGCACCATTTGTCAAGTCTGAGCCTATTCCTGAAACTAACAACGAGCCTGTTAAAGTGGTAGTTGGGAAAACTCTAGAGGACATAGTTTTCAACTCTGGGAAGAATGTTTTGCTTGAATTTTATGCTCCTTGGTGTGGACATTGCAAACAGTTGGCTCCAATTTTGGATGAAGTTGCCGTCTCATACCAAAGTGATGCTGATGTTGTTATTGCAAAACTTGATGCTACTGCCAATGATGTCCCTAGCGAAACCTTTGTGGTTCAAGGCTATCCAACATTGTACTTCAGGTCAGCCAGTGGAAAACTATCACAATACGATGGTGACAGGACAAAGGAAGCCATCATAGAATTTATCGAAAAGAGCCGGGATAAACctgctgcagctgctgctgctgctgccgctCAGCAAGAAGTAGAACAACCAAAGGATGAGCTTTGA 1620 0.4056 MLFLLPHTFSLHKTPLIPLFFEIPKISKHSTMAKTVSILFLFGLSLSLLVLLPSQISAEESEAKEYVLTLDNSNFHDTVSKHDFIVVEFYAPWCGHCKNLAPEYEKAASILSSHNPPIFLAKVDANEEKNKEIATQYEVKGFPTIKILRNGGKKIQDYKGPREADGIVEYVKKQSGPASTEIKSADDASAFIGEKSVVIVGVFPKFSGEEFDKFIAVAEKLRSDYDFGHTLDAKHLPRGDSSVSGPVVRLFKPFDELFVDSKDFNVEALEKFIEESSIPVVTVFNNDPSNHPYVSKFFNSPNAKAMLFLNFSAEGAEPIKSKYSEVAEQYKQQGVSFLVGDVEASQGAFQYFGLKEDQVPLIIVQNTDGKKFFKPNLEADDVPTWLKAYKEGTLAPFVKSEPIPETNNEPVKVVVGKTLEDIVFNSGKNVLLEFYAPWCGHCKQLAPILDEVAVSYQSDADVVIAKLDATANDVPSETFVVQGYPTLYFRSASGKLSQYDGDRTKEAIIEFIEKSRDKPAAAAAAAAAQQEVEQPKDEL 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02161 539 Pfam Thioredoxin 67 173 IPR013766 -
Car05g02161 539 Pfam Thioredoxin 411 514 IPR013766 -
Car05g02161 539 PANTHER PROTEIN DISULFIDE ISOMERASE 46 531 - -
Car05g02161 539 CDD PDI_b'_family 293 390 - -
Car05g02161 539 SUPERFAMILY Thioredoxin-like 180 279 IPR036249 -
Car05g02161 539 TIGRFAM ER_PDI_fam: protein disulfide isomerase 66 539 IPR005792 GO:0003756
Car05g02161 539 ProSiteProfiles Thioredoxin domain profile. 389 517 IPR013766 -
Car05g02161 539 PRINTS Thioredoxin family signature 85 93 - -
Car05g02161 539 PRINTS Thioredoxin family signature 93 102 - -
Car05g02161 539 PRINTS Thioredoxin family signature 138 149 - -
Car05g02161 539 ProSiteProfiles Thioredoxin domain profile. 46 176 IPR013766 -
Car05g02161 539 SUPERFAMILY Thioredoxin-like 67 177 IPR036249 -
Car05g02161 539 Pfam Thioredoxin-like domain 203 384 - -
Car05g02161 539 Gene3D Glutaredoxin 280 404 - -
Car05g02161 539 Gene3D Glutaredoxin 54 175 - -
Car05g02161 539 SUPERFAMILY Thioredoxin-like 378 515 IPR036249 -
Car05g02161 539 PANTHER PROTEIN DISULFIDE-ISOMERASE 46 531 - -
Car05g02161 539 TIGRFAM pdi_dom: protein disulfide-isomerase domain 71 174 IPR005788 GO:0003756
Car05g02161 539 TIGRFAM pdi_dom: protein disulfide-isomerase domain 415 514 IPR005788 GO:0003756
Car05g02161 539 CDD PDI_b_family 179 275 - -
Car05g02161 539 SUPERFAMILY Thioredoxin-like 277 408 IPR036249 -
Car05g02161 539 CDD PDI_a_PDI_a'_C 410 512 - -
Car05g02161 539 ProSitePatterns Thioredoxin family active site. 431 449 IPR017937 -
Car05g02161 539 ProSitePatterns Thioredoxin family active site. 86 104 IPR017937 -
Car05g02161 539 Gene3D Glutaredoxin 405 519 - -
Car05g02161 539 Gene3D Glutaredoxin 176 279 - -
Car05g02161 539 CDD PDI_a_family 68 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02161 Car-Chr5 66878430 66882006 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02161 K09580 - gmx:100170705 842.417