Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02138 ATGTTCAATCCGATGAAAGCGTTCAAAGAGTTGTTGAGACTGTTCTCAATAAATACGGTTGCATCGATATTCTCGTTAATAACGCCGGTGTTCCCTGTGTGGGCCCACTCGCTGAGGTTCCTCTTTCTACCATCCAAAACACCTTTGATACCAACGTCTTTGGTTGGTTCATTGAGAATGGTTCAAGCTGTGGTTCCTCACATGGCAAATAGGAAAAAGGGAAAGATTGTGAATGTAGGCAGTGTTACTGGTATGGCTTCTGGACCTTGGAACGGTGCTTATTGTGCCTCTAAAGCTGCTCTTCATGCTTTGACAGATACATTAAGAATGGAACTAAGACATTTTGGAATTGATGTTGTGAATGTTGTCCCTGGAGCTGTGAAATCAAATATTGGAAAATCCGGCATAGCAATCTACAACCGCATGCCAGAGTGGAAGCTGTTCAAGCCATTTGAAGCAGCAATCCAAGAGAGAGCTCATTTTTCTCAGATGTCAAAATCAACCGCTACAGATGAGTTTGCTAAACACACTGTAGCTGCTGTCCTTAGGAAGAAACCACCTGCATGGTTCTCCTATGGTCATTATACTACTGTCATGGCTATCATGTACCATTTACCTCTCTGTGTTAGAGACTTTCTTTTTAAGAAAACAATGAAATGCTGA 663 0.4208 MFNPMKAFKELLRLFSINTVASIFSLITPVFPVWAHSLRFLFLPSKTPLIPTSLVGSLRMVQAVVPHMANRKKGKIVNVGSVTGMASGPWNGAYCASKAALHALTDTLRMELRHFGIDVVNVVPGAVKSNIGKSGIAIYNRMPEWKLFKPFEAAIQERAHFSQMSKSTATDEFAKHTVAAVLRKKPPAWFSYGHYTTVMAIMYHLPLCVRDFLFKKTMKC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02138 220 Pfam short chain dehydrogenase 50 133 IPR002347 -
Car05g02138 220 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 51 207 IPR036291 -
Car05g02138 220 Gene3D - 48 205 - -
Car05g02138 220 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 82 IPR002347 -
Car05g02138 220 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 113 IPR002347 -
Car05g02138 220 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 81 109 IPR020904 GO:0016491
Car05g02138 220 PRINTS Glucose/ribitol dehydrogenase family signature 94 113 IPR002347 -
Car05g02138 220 PRINTS Glucose/ribitol dehydrogenase family signature 68 84 IPR002347 -
Car05g02138 220 PRINTS Glucose/ribitol dehydrogenase family signature 115 132 IPR002347 -
Car05g02138 220 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 52 217 - -
Car05g02138 220 PANTHER BNAANNG04690D PROTEIN 52 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02138 Car-Chr5 66598441 66600465 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02138 49 133 Lipid Metabolism Gene Families AT1G67730 35.632 4.01e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02138 - - mtr:MTR_3g087850 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02138 05 66598441 66600465 Car05g02138 05 66598441 66600465 ECH