Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02123 ATGGGAGACATTTCGCCAGAGAGAAAATCGGGTTGTGGATTGATAACATCAGTATTTGGACGACACGGTATATGGTCACGCAAATCATCCTCTGCAGGTTCTTCTCCCATAGCAATACCAAACAACTCAAACGATCCAAAACGACGTCGAAGTGGCTCTAAAGATGTCGTTTACGTAGACGCACCTTCACACAATGTCTCAAATTCATCAAATAATAATAATCCCCAAAGGAGACACCCCAATGTAACAACAATGACACGTGACACATTACCAAAGGTTTCAATTTCAGCTACTACTCAGGGGTATGTTAATCAAGGAAGGAGGGTGCCAAAAGAAGCAATTGGTATTTCTGGTGAACTAGAAAGCATGATTAATGATCACCATAAAACCAAAGGAAATAGTACTCTTGTTAGAGCTTCTTCTAGCAATGTAATGTTGTTTGGAAATTTAGGTAACCTTAGACAAGGAGCAGataataataataataataataataGTTATTCACGTACTGCAATGGATAATAATTTCAACCATAATGTTGCAAAATCTACCATCAATTTCAACGAACAATCCAACGGTTCACTTTGCAGGGCTTTATCAACTAGAATGGATCCAGAGCAATTGAAAATAATGGGGAATGAGGATTATAAGAATGGGAGATTTGCAGAGGCATTAGCTTTGTATGATGCAGCTATTGCAATTGATCCTAAAAAGGCTTCTTATAGAAGTAACAGAAGTGCTGCTTTAACTGCTCTTGGTAGGCTTCTTGAAGCTGTTTTTGAATGCAGGGAAGCCATTCGGATTGAACCTCATTACCATAGAGCTCATCTTCGTTTAGGAAATTTGCACTTTAGATTAGGAGAAACAGATAAGGCACTTTACCATTATAAACAAGCAGGACCAGAGGTTGATCCTGATGAGGTTGCTAAAGTAAAGATTCTTCAATCTCATTTAAATAAGTGCACTGAGGCTCGTAGGTTAGGAGATTGGAACATGCTCGTTACTGACACTAACAAAGCTATATCATCTGGTGCAGATTCTGCCCCACAGATATTTTCATTGCAAGCGGAAGCCTTGATAAAACTCCGAAGGCATCAAGATGCGGACAACGTAATGTCAAAGTGTCCTAATTTTGATGTTGACAAGTGTACCAAGTTTTTTGGACCAATTGGTAGTGCCAATTTGTTAGTCACACGTGCTCAAGTTGATATGGCTGCTGGCAGATTTGATGAAGCTTTAGAGGCAGCACAAAAAGCAGTTAGGCTAGACTCTAACAACAAGGTAGCAAACAAGGTATTGAGAAAAGCTCATGCTGTGACAGCTGCAAGAGCAAGGGGAAACGAGCTTTTCAAGGCATCAAAATTCTCGGAGGCTTGCATTGTATATGGAGAAGGACTTGAGCATGATCCATATAACTCGGTTTTACTATGTAACAGAGCTGCTTGTAGATCAAAACTTGGTCAATTAGAGAAAGCAGTGGAAGATTGCACTGCTGCCCTTAATTTACGTCCATCTTACACAAAAGCAAGGTTGAGAAGGGCTGATTGTAATGCTAAGCTGGGAAGATGGGAAGCTTCAATAGGAGACTATGAAATGTTGTTAAAAGAGACACCAGGAGATGAGGAAATAAATCAAGCATTGTTGGAGGCCCAAGTACAGCTTAGGAAACAACGAGGTGGATAA 1683 0.3981 MGDISPERKSGCGLITSVFGRHGIWSRKSSSAGSSPIAIPNNSNDPKRRRSGSKDVVYVDAPSHNVSNSSNNNNPQRRHPNVTTMTRDTLPKVSISATTQGYVNQGRRVPKEAIGISGELESMINDHHKTKGNSTLVRASSSNVMLFGNLGNLRQGADNNNNNNNSYSRTAMDNNFNHNVAKSTINFNEQSNGSLCRALSTRMDPEQLKIMGNEDYKNGRFAEALALYDAAIAIDPKKASYRSNRSAALTALGRLLEAVFECREAIRIEPHYHRAHLRLGNLHFRLGETDKALYHYKQAGPEVDPDEVAKVKILQSHLNKCTEARRLGDWNMLVTDTNKAISSGADSAPQIFSLQAEALIKLRRHQDADNVMSKCPNFDVDKCTKFFGPIGSANLLVTRAQVDMAAGRFDEALEAAQKAVRLDSNNKVANKVLRKAHAVTAARARGNELFKASKFSEACIVYGEGLEHDPYNSVLLCNRAACRSKLGQLEKAVEDCTAALNLRPSYTKARLRRADCNAKLGRWEASIGDYEMLLKETPGDEEINQALLEAQVQLRKQRGG 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02123 560 SUPERFAMILY TPR-like 440 556 IPR011990 GO:0005515
Car05g02123 560 Pfam TPR repeat 212 253 - -
Car05g02123 560 ProSiteProfiles TPR repeat profile. 205 238 IPR019734 GO:0005515
Car05g02123 560 PANTHER OS01G0616333 PROTEIN 5 558 - -
Car05g02123 560 Pfam Tetratricopeptide repeat 462 494 - -
Car05g02123 560 MobiDBLite consensus disorder prediction 27 84 - -
Car05g02123 560 MobiDBLite consensus disorder prediction 62 84 - -
Car05g02123 560 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 5 558 IPR044534 -
Car05g02123 560 SUPERFAMILY TPR-like 205 428 IPR011990 GO:0005515
Car05g02123 560 ProSiteProfiles TPR repeat profile. 393 426 IPR019734 GO:0005515
Car05g02123 560 MobiDBLite consensus disorder prediction 27 46 - -
Car05g02123 560 Gene3D Tetratricopeptide repeat domain 203 559 IPR011990 GO:0005515
Car05g02123 560 Pfam Tetratricopeptide repeat 275 300 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 205 238 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 239 272 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 393 426 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 507 540 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 273 307 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 439 472 IPR019734 GO:0005515
Car05g02123 560 SMART tpr_5 473 506 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02123 Car-Chr5 66439456 66442407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02123 253 548 Glycosyltransferase AT3G04240 22.327 1.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02123 - - lang:109326248 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g02123 05 66439456 66442407 Car05g02123 05 66439456 66442407 ECH