Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02109 ATGGGTGGTTCTGGTTCCAAGCTTGAAAAGGCTCTCGGTGACAATTTCCCCGAAGGAGAACGTTACTTTGGCCTTGAGAATTTTGGAAATACTTGTTATTGCAACAGCGTTTTGCAGGCTCTATACttctgtatttcatttcgagaacaattgatagagtattatgctaaacacaaaagcctaacaaatgcagaggaaaatcttttgacttgcttagcggaattattttcgcagATAAATTCCCAGAAGAGGAAAACAGGTGTAATTTCTCCCAAACGATTTATACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCCCATGAATTCTTGAACTATTTGTTAAATGAAGTTGTTGACACTCTGGAGAAAGAGGCCCATGCTGCAAAAGTCAATCAAAAGACGTCTCCACCTTCTGAGAAGATCGCAGATGGACCAAAGAGTGGTTTAGCTAATGGTGCTAAAAACGAGCCTTTAGCTACTTGGGTGCACAAAAGTTTTCAGGGTATACTTACCAATGAGACAAGGTGCTTGCAATGCGAAACAGTAACGGCTAGGGATGAAACATTTCTCGACTTGAGTCTTGATATCGAACAAAACAGTTCAATTACAAGTTGTTTGAAAAATTTCAGTTCGACCGAGACATTGAATGCCGAAGACAAATTTTTTTGTGATAAGTGCTGTAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAAAAGCCGCCCCATGTCTTAGTCATTCATCTCAAGCGGTTTAAGTACATGGAACAGCTGGGCCGTTACAAGAAGCTGGTTTACCGCGTGGTCTTTCCCCTTGAACTCAGGTTGAGTGATACAGATGAAGAAGCAGATATTGAGTATACACTATTTGCTGTAGTTGTCCATGTTGGGAGCGGGCCCAACCACGGGCATTATGTTTGCCTTGTAAAAAGCCATAACCATTGGCTATGTTTTGACGACGAAACCGTTGAGGTAGTGGATGAGCCTTCTGTTCAGACATTCTTTGGGTCGACGTACGATTTCAACAATAATACAGACCATGGTTACATTTTGTTCTATGATAGCATCAAAAGAAAATAG 1101 0.3751 MGGSGSKLEKALGDNFPEGERYFGLENFGNTCYCNSVLQALYFCISFREQLIEYYAKHKSLTNAEENLLTCLAELFSQINSQKRKTGVISPKRFIQRLKKQNELFRSYMHQDAHEFLNYLLNEVVDTLEKEAHAAKVNQKTSPPSEKIADGPKSGLANGAKNEPLATWVHKSFQGILTNETRCLQCETVTARDETFLDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHVLVIHLKRFKYMEQLGRYKKLVYRVVFPLELRLSDTDEEADIEYTLFAVVVHVGSGPNHGHYVCLVKSHNHWLCFDDETVEVVDEPSVQTFFGSTYDFNNNTDHGYILFYDSIKRK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02109 366 Gene3D Cysteine proteinases 6 362 - -
Car05g02109 366 SUPERFAMILY Cysteine proteinases 21 361 IPR038765 -
Car05g02109 366 CDD Peptidase_C19G 24 360 - -
Car05g02109 366 MobiDBLite consensus disorder prediction 135 154 - -
Car05g02109 366 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 363 - -
Car05g02109 366 Pfam Ubiquitin carboxyl-terminal hydrolase 23 360 IPR001394 GO:0004843|GO:0016579
Car05g02109 366 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Car05g02109 366 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 294 312 IPR018200 GO:0004843|GO:0006511
Car05g02109 366 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 363 IPR028889 -
Car05g02109 366 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02109 Car-Chr5 66292662 66296923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02109 24 366 Miscellaneous Gene Families AT4G31670 26.781 6.84e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02109 K11842 - gmx:100305765 656.366