Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02079 ATGCATCTGCAGCTAGAAACTTGGACAGCTTTGGTTGCAATTTTGTGTTTACTTGGTTTTATTCTGAAGGAGATTCTTATGGGAGGGAATAGTTCAAAAGGGTCACCTAGAAGGAGACATGTTCCTAACTCATATGAGTCTTCAGGTTCTTCTTCATCTTCATGGGATAATAATAACTATGGTGGTGGATATCCACCACACCCTCAACAGAGTTCATATCAAACACCTCATCATCAGTTTGCATCTGCTTCAGCTCCATTATATGAGTACTCACAGCCAAAAAAGAAGTTAGATAGGAGGTATTCAAGGATAGCTGATAATTACCGTTCATTGGATGAGGTTACTACTGCTCTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTGGGCATTGATTTCACTAAGAGCAATGAGTGGACAGGGAAGAGGTCGTTCAATCGGAAAAGTTTACATCACACTGGAAGTGGTCAAAACCCTTACGAACAAGCAATCTCTATTATTGGGAAAACTTTATCTACTTTTGATGAAGATAACTTGATTCCATGTTTTGGATTCGGAGATGCGTCGACACATGATCAAGATGTATTTAGCTTCTATTCAGAAGAGAGGTTATGCAATGGGTTTGAGGAAGTTTTGGCGCGATACAGAGAAATTGTTCCTCATCTCAAACTTGCAGGACCTACCTCATTTGCCCCTTGTATTGAAATGGCTATGACTATTGTTGAACAAAGTGCTGGTCAATATCACGTCCTGCTACTAATTGCAGATGGACAGGTGACCAGAAGCATCGATACAGAACATGGCCACCTAAGTCCACAGGAACAGAAGACAATAAACGCAATCGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTAGGAGTTGGAGATGGACCGTGGGATATGATGAGGGAATTCGATGATAACATCCCATCTCGATCATTTGACAATTTTCAGTTTGTGAATTTTACCGAGATAATGTCAAAGAATGTAAATCCAAGCCGAAAAGAGACAGAATTTGCGCTTGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGAGCTTGGCTTATTAGGTGCACGGAGGGGACATTCACCGGATAGGGTTCCTCTACCCGCTCCACTTTATAATAGGACTTCTTCGAACATCAGCGGAAAATCTTTTCGGTCAAACAGTTTTCAGCAGAATGTACCTAAGAATACTGGTTATGACAGCAATGTGAACACTGAACCATCTTCAAGCTCTTTACATGATAATAAGGTTTGCCCCATTTGTCTCACCGATGCGAAGGATATGGCATTTGGTTGTGGGCATCAGACTTGTTGTGGATGTGGAGAAGACCTACAATTCTGTCCCATTTGCCGGAGCACAATAAATACTAAGATAAAGCTTTACTAG 1413 0.4119 MHLQLETWTALVAILCLLGFILKEILMGGNSSKGSPRRRHVPNSYESSGSSSSSWDNNNYGGGYPPHPQQSSYQTPHHQFASASAPLYEYSQPKKKLDRRYSRIADNYRSLDEVTTALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHTGSGQNPYEQAISIIGKTLSTFDEDNLIPCFGFGDASTHDQDVFSFYSEERLCNGFEEVLARYREIVPHLKLAGPTSFAPCIEMAMTIVEQSAGQYHVLLLIADGQVTRSIDTEHGHLSPQEQKTINAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRSFDNFQFVNFTEIMSKNVNPSRKETEFALAALMEIPSQYKATIELGLLGARRGHSPDRVPLPAPLYNRTSSNISGKSFRSNSFQQNVPKNTGYDSNVNTEPSSSSLHDNKVCPICLTDAKDMAFGCGHQTCCGCGEDLQFCPICRSTINTKIKLY 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02079 470 CDD RING-HC_RGLG_plant 426 470 IPR045317 GO:0061630|GO:0070534
Car05g02079 470 PANTHER COPINE FAMILY PROTEIN 1 27 470 - -
Car05g02079 470 Pfam Copine 150 363 IPR010734 -
Car05g02079 470 CDD vWA_copine_like 104 354 IPR010734 -
Car05g02079 470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 404 470 IPR013083 -
Car05g02079 470 PANTHER RING-FINGER PROTEIN 27 470 - -
Car05g02079 470 SMART VWA_4 125 328 IPR002035 -
Car05g02079 470 MobiDBLite consensus disorder prediction 36 78 - -
Car05g02079 470 MobiDBLite consensus disorder prediction 374 421 - -
Car05g02079 470 MobiDBLite consensus disorder prediction 30 78 - -
Car05g02079 470 ProSiteProfiles Zinc finger RING-type profile. 427 460 IPR001841 -
Car05g02079 470 SUPERFAMILY RING/U-box 419 466 - -
Car05g02079 470 SUPERFAMILY vWA-like 127 309 IPR036465 -
Car05g02079 470 MobiDBLite consensus disorder prediction 380 421 - -
Car05g02079 470 Pfam Zinc finger, C3HC4 type (RING finger) 424 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02079 Car-Chr5 66030719 66035528 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02079 K16280 - gmx:100820356 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00849 06 8332331 8335834 Car05g02079 05 66030719 66035528 PCT