Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02027 ATGTCGCTCGCATCATTCTCCACCATCCGCCACCACCGTTTACTGGCATCCGCCGCACCTAACCTTCTCCGGCGTTTTCGTTCCTTCCCAATCGCCGCCAGACAACAAAACCCTAAACAAGAAGCCCCAAGCAAAAACCTCCTAAAAGCCAAACACACATTAAAACACTTCTCATCTCTCTCTCCAGTCCTCTCCCGTGAAGACAACCCTCCACTCTCCGAATCCCAAGCCGTCGGCGTCGTCGCTTCTTCCCAAGCCAATTTCATGCGTGTAATCGTCCAATCACAGCCTTCTGGAACCTTCCACGACACTTCCGGAGGAATCGAACTGTTGTGCGTTGTTAGGGCGCTGCTGAAGAAGATAAAGCGAAGGGTTATGGTTGGAGATAAGGTTCTAGTAGGTTCTGTTGATTGGATTGATCGTAGAGGCATGATTGAAAACGTGTTTCAGCGAAATTCTGAAATGCTTGATCCTCCTGTGGCTAACGTGGATCAGTTACTTGTACTTTTTTCGCTTGATCAGCCCAAGCTAGAGCCTTTTACGCTTACACGCTTTTTGGTTGAAGCCGAGTCCACTGGAATTCCTCTCACTCTAGCGCTTAATAAGACTGAGCTTGTTGATAAAGAGACCATGAATTCCTGGAAAGCTAGGCTACATGATTGGGGCTACCAGCCAATCTTTTGCAGTGTGGAATCTGGACATAACCTTGATCTTCTTGCGTTCAAATTGCGAGATCAAACAACAGTGATTGCGGGTCCTAGTGGAACTGGGAAGTCTAGTTTGATCAATGCCCTTAGAAGCAATCCCCGTGCTTGTGATACTTTAGATGGGGAGAATTGGTTTGAACCTATTTTAGGTAGCAAGTGGTTTGCAGACCAGCGAGTTGGAGAGGTTTCAACAAGAAGTGGTAGAGGGAAGCATACTACTCGTCACGTCTCTCTCCTTCCAATATCTGGAGGGGGTTATCTTGCTGATACTCCTGGATTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAGTCTCTCGCACAAACTTTTCCTGAAATCAGGAAAATACTTGGTGGAAATGAGCCTACAAAATGTTCATTTAACAATTGCTTGCATCTTGGTGAACCTGGCTGCATTGTGAAGGGGGATTGGGAAAGATATTCCTTCTATTTTCAACTTCTTGATGAAATTAGAATCAGAGAGGAGTTCCAGTTGAGGACATTTGGAACTAAAAGAGAAGGGGATGTAAGGTTAAAAATAGGAGATATGGGTTCTCAGCAAGCAGAACCACGTTTGGAACTTAAGAAGCATAGAAGACAATCTCGGAAGAAGACTAACCAATCAATTTTAGATGGCCTGGATGATGACGACAATTTGCTTGACGAGGAGAGCGATCCCCTTTTAAATGCTTTGAAGAATGAAAACCCTTAA 1419 0.4496 MSLASFSTIRHHRLLASAAPNLLRRFRSFPIAARQQNPKQEAPSKNLLKAKHTLKHFSSLSPVLSREDNPPLSESQAVGVVASSQANFMRVIVQSQPSGTFHDTSGGIELLCVVRALLKKIKRRVMVGDKVLVGSVDWIDRRGMIENVFQRNSEMLDPPVANVDQLLVLFSLDQPKLEPFTLTRFLVEAESTGIPLTLALNKTELVDKETMNSWKARLHDWGYQPIFCSVESGHNLDLLAFKLRDQTTVIAGPSGTGKSSLINALRSNPRACDTLDGENWFEPILGSKWFADQRVGEVSTRSGRGKHTTRHVSLLPISGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIRKILGGNEPTKCSFNNCLHLGEPGCIVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKREGDVRLKIGDMGSQQAEPRLELKKHRRQSRKKTNQSILDGLDDDDNLLDEESDPLLNALKNENP 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02027 472 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 394 IPR027417 -
Car05g02027 472 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 77 397 IPR004881 GO:0003924|GO:0005525
Car05g02027 472 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 66 454 - -
Car05g02027 472 CDD YjeQ_EngC 161 391 IPR004881 GO:0003924|GO:0005525
Car05g02027 472 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 66 454 IPR004881 GO:0003924|GO:0005525
Car05g02027 472 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 125 268 IPR004881 GO:0003924|GO:0005525
Car05g02027 472 SUPERFAMILY Nucleic acid-binding proteins 78 151 IPR012340 -
Car05g02027 472 Gene3D - 149 334 IPR027417 -
Car05g02027 472 Gene3D Probable gtpase engc; domain 3 336 398 - -
Car05g02027 472 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 152 332 IPR030378 GO:0005525
Car05g02027 472 Gene3D - 72 148 IPR012340 -
Car05g02027 472 MobiDBLite consensus disorder prediction 416 472 - -
Car05g02027 472 Pfam RsgA GTPase 148 334 IPR010914 GO:0003924|GO:0005525
Car05g02027 472 ProSiteProfiles EngC GTPase domain profile. 161 330 IPR010914 GO:0003924|GO:0005525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02027 K06949 - gmx:100796145 729.169