Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g02009 ATGTCTCAGGTTGATAACAGAAATTCTTCGGCTGCTAAGCGTGCTAGGACTGATGGTAGCCGCAGGGAGGATGATTGGACATGTCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCAAGGCCTGCTGATCACAATTCAAAATCTGCTGTCAAGCCTCTTCAAGCTCCCCAGGGCTATTCATCCTCAGCTCCATATTTAGGCTCTAATGCTCCCCCTTCAATATATCTTGGTGTTCCACCATATGGGTCTTCTTTATTCAATGGATCACCTATTCCTCCCTATGAGGTTCCATTTTCTGGAGGATCGGCCTATCACTACAATTATGGAAGTCGTCTTTCTGCTGGCAGTCCATATAGACCATTGCATCTATCAGGACCAGCACCATACACTAGTGGACCGATGGTGGGAAATGGTGGGATCTATGCTATGCCTCAGCTATTGGATCGCTATGGCCTAGGCGTTCCAATTGGACCTGGAACAGTGGGCACTAGGCCGGGTTTTTTTCGTGATGACATGTCTCAGAAAAAGGGAGCAGATGCAACTCGAGACAATGATTGGGCATGTCCAAAATGTGGCAATGTCAATTTCTCATTTAGAACTGTTTGCAACATGAGAAAGTGCAACACACCCAAGCCTGGATCCCAGCCCTCAAAGTCTGACAAGAACTCTAAACAAAAGATGCCTGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCATTCCGAACCAAGTGCAACAGGCAGAATTGTGGTGCCGACAAGCCAGCTGAGTCGGAAAAATCTCCCTCATCATCTCCAGATCAAAATGAGCAGGTTTGTTTTGTAAAGATTTTTCAATTTGCAAACATTATCTCATGGTTGCAACAGCTATTGGTTTTTCATGAGCAGCTTTGTTACATAGTTAATATTTTCAAATGGAAAGCTGTTGTGAAGTTGTTGTTTAAATGGGTTGTTTCGAAAAGCTTCGCTTATGCTTCCTGTCATTTGGATTCTTTTGTTGCAACTTATATATACATATATACTTATTTGATTACCTTTGTATCTATCCATTTCCATTGCAATATTTAA 1110 0.427 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPLQAPQGYSSSAPYLGSNAPPSIYLGVPPYGSSLFNGSPIPPYEVPFSGGSAYHYNYGSRLSAGSPYRPLHLSGPAPYTSGPMVGNGGIYAMPQLLDRYGLGVPIGPGTVGTRPGFFRDDMSQKKGADATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQPSKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSSSPDQNEQVCFVKIFQFANIISWLQQLLVFHEQLCYIVNIFKWKAVVKLLFKWVVSKSFAYASCHLDSFVATYIYIYTYLITFVSIHFHCNI 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g02009 369 PANTHER OS08G0521400 PROTEIN 5 314 - -
Car05g02009 369 Gene3D - 14 54 - -
Car05g02009 369 Gene3D - 184 225 - -
Car05g02009 369 Gene3D - 228 271 - -
Car05g02009 369 PANTHER ZINC FINGER PROTEIN 5 314 - -
Car05g02009 369 MobiDBLite consensus disorder prediction 1 25 - -
Car05g02009 369 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Car05g02009 369 MobiDBLite consensus disorder prediction 11 25 - -
Car05g02009 369 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Car05g02009 369 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Car05g02009 369 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Car05g02009 369 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Car05g02009 369 SMART zf_4 241 267 IPR001876 -
Car05g02009 369 SMART zf_4 195 221 IPR001876 -
Car05g02009 369 SMART zf_4 24 50 IPR001876 -
Car05g02009 369 SUPERFAMILY Ran binding protein zinc finger-like 189 225 IPR036443 -
Car05g02009 369 MobiDBLite consensus disorder prediction 220 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g02009 Car-Chr5 65394132 65399096 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g02009 180 272 EF-hand Containing Proteins AT1G55040 32.258 1.90e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g02009 - - gmx:100796535 560.451