Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01993 ATGGCCACTCCCAAAGTTCTCATGGTCGCAGAGAAGCCTAGCATCGCTCTCTCCATTGCCTCTGTTCTCTCCCACGGCCAGATGTTTACAAGAAAAGGAAGCACAGAAGTTCACGAGTTTGAGGGGAGGTTTCTTGGATCGCCTGCACGCTTTAAAGTGACATCAGTTATTGGACATGTATTCAGTGTAGATTTTCCTGGTAAATACCAAGATTGGGCGGCCACAGATCCCTTAGATCTTTTTCAAGCTCAGGTTTTAAAGACCGAATCAAATCCAAAGGCACATATTTGTAAACATTTAAATCAAGAAGCTCGTGGATGCCGTTATTTGGTATTGTGGTTGGATTGTGATCGTGAGGGAGAAAATATATGTTTTGAGGTTATAGAATCAACAGGTTTCAATATAAAGGATGTCTATCGTGCACGATTTTCTGCTGTTACTGAGAAAGATGTTCTGAAGGCTCTAGACAACCTTGTCAGACCCAACAGGGATGAAGCAATGGCTGTAGATGCCAGACAAGAGATAGATTTGAAAGTTGGAGTTGCCTTCACTCGATTTCAGACAAGTTTTTTCCAGGGAAAATATGGGAACCTAGATTCCAGAGTCATCTCCTATGGACCCTGTCAAACTCCAACTTTAGGATTTTGTGTGCAGCGGTATTTACAAATAAATACTTTCAAGCCAGAGAAGTTTTGGAGTTTGCACCCTTACATAATTCAAAGTGGCTATGAAATTCAACTAGAATGGCAACGCAGCAAATTGTTTGACATAAATGTTGCTATGATGTTTCAAAAATTGGTTGCGGAAGATGGAATTTTTGAAGTGGCTGAAATATCAGAAAAACAGGAAACCAAATGTCGTCCTGTTGGTCTAAACACAGTGAATCTTCTGAAGGTTGCTTCAAGTGCTCTAGGGTTTGGTCCTCAGATGGCTATGCAACTAGCTGAACGATTGTATACTCAAGGCTTCATCAGCTATCCACGAACAGAAAGCACGTCATACCCTCCGTCATTTGACTTTCATGGTGCACTCTCTGCACAAACAAATAATCCAACTTGGGGTAGTTATGTAAAAGGGCTACTCACCAGTGGTTATCAAAAACCTCGATTGGGAACAGATGCGGGCGATCATCCTCCCATTACTCCAATGAAATCTGCATCAGAGGATATGCTAGGTAATGATGCTTGGAAGCTGTACCAATATATCTGTCAATACTTCATAGGGACAGTGTCTCCGGACTGCAAGTATGTAAGGAAAAAGGTTGAGTTTTCAGTTGGTGGAGAGTTCTTTCATTGTACAGGGCAGCATGTTATCACCAAAGGATTTACAGCTATTATGCCTTGGTTGTCAATAAATGATAAAAGTATTCCGTCATTTACAAAAGGGCAGAAAATAAAAGTAACAAAGGTGGAGCTCTATGAGGGGAGTACCACACCTCCAGATTTTCTTACTGAAAGTGAGCTGATCTCCCTAATGGAGAAGAATGGAATAGGAACAGATGCATCAATTCCCGTACATATTAACAATATATGTGAGCGGAATTATGTGCAGGTAGTACAAGCAGGCAGGAAGCTTGTCCCAACCACATTAGGTATAACTTTAATAAGAGGTTATCAATCAATTGATCCAGACCTCTGCCTGCCCGATATTCGTAGCTTCATTGAGCAACAAATTACTCTTATTGCTAAGGGTCAGGTAGATCATCATCGTGTAGTGCAGCATGTAATTGAACAATTCAAGCAGAAGTTTTGTTATTTTGTCAAGAAGATTGAAGCCATGGATGCATTATTTGAAGCACAATTTTCTGCACTTGTTGACTCAGGCCGTATTCTGAGTAAATGTGGTAAATGCTTGCGATATATGAAGTATATTTCTTCTCAGCCACCACGTCTGTATTGTATGACATGTGAGGAAGTTTATCCTCTTCCACAGAAAGGCACAATAAAGCTATACAAGGAATTGTCTTGTCCTTTAGACAATTTTGAGCTTTTGATCTGCTCCATCCCTGGCCCAGAGGGTAAATCATTCCCACTATGCCCTTACTGCTACAGCAATCCCCCATTTGAAGGTGTTGAAGAACTCATCAATTCAGCTAAAACTAGTACCGCTGGCAAGAATGGCAAGGGAGCTGGCATGGCATGCAACCTATGCCCCCATCCCACTTGCCCAAATTCTTTAGTTTCCCAGGGCGTATGTGCTTGCCCTGAGTGCAGTGGCACACTTGTCTTAGACCCAATAAGTGCTCCCAACTGGCGACTTTGTTGCAATATGTGCAATTGCCTAGTTTTTCTTGCACAGGGTGCTCATAGAATCTCAACAACTAAAGAACGGTGCCCTGAATGTGACTCTTCAATCTTAGAAGTTGACTTCAACAAGAAAACAACTCCTCTGGAAGACGGGTCTACGTTGCACCGTGGTTGCATTCTTTGCGATCCATTACTGCATTCCATCGTGGAGATGAAATATGGAAGAAGCTTCAAGCgaggaagaggtcgaggtagaggaagaagaggtgcaattcgagATGTTACGGGAGCAATTGTCATTGCAATGCAAGCACCCTATTGTATTAGAAATTGGATGGACTTTAGAATGACGTATCTAACTTGTCTCTACTTCCATAGGAAACAAACGCTAAACTTTCAACCTTACACTTTTTTTTTCCCACTTCAAATGGCTCTATGTGGTTCTATTTCTTCACCGAACTTGAACTGGCAAATTGGGCCAAGAAAGATGTTCAAATTGGGTTCTTCTATGAACTGTGATACCACAATTTCGTTATCATTTTCTGGGAGTGATTCCATGGGTCTTAACTTGAGGTTTAACCTTGCTTCAACTCGTGTTGCTAAGACCAACAGGTTTAGGAACCATGTTTCTCCATTGAAGGTAGTTTGCATCGATTATCCACGTCCTGAGATTGAAAATACAGTTAATTTCCTTGAAGCTTCTTACTTGTCTTCCACCTTTCGTGCTTCTCCTCGTCCAACCAAACCCTTGAAGGTTGTTATTGCTGGTGCAGGACTGGCTGGTTTATCAACTGCAAAATATTTGGCAGATGCTGGTCACAAGCCAATATTGCTGGAGGCAAGAGACGTTCTAGGTGGAAAGGTTGCTGCATGGAAAGATGAAGATGGAGACTGGTATGAGACCGGCCTACATATATTCTTTGGGGCTTACCCTAATGTGCAGAACCTATTTGGAGAACTTGGTATTAATGATCGGTTACAATGGAAGGAGCATTCCATGATCTTTGCTATGCCAAGCAAGCCTGGAGAGTATAGTAGATTTGATTTTCCAGAAGTCCTTCCATCTCCATTAAATGGAATATGGGCAATTTTGAGGAATAATGAGATGCTGACGTGGCCAGAGAAAATTAAATTTGCAATTGGACTTCTGCCTGCTATGCTTGGTGGACAGGCGTATGTTGAGGCTCAAGATGGTGTTTCTGTTAAAGAATGGATGAGAAAACAGGCCCTAAACTTCATCAACCCTGATGAACTTTCAATGCAATGTATTTTAATTGCTTTAAATCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCCTTTTTGGATGGCAACCCCCCTGAAAGGCTTTGTATGCCAATTGTTGAACATATTCAGTCCTTGGGCGGTGAAGTCCATCTTAATTCACGCATTAAAACAATTGAATTAAACGATGATAACACAGTGAAGAGCTTTTTACTTAATAATGGGAAGGTGATTGAAGGGGATGCTTATGTGTCTGCAGCACCAGTGGATATTCTGAAACTTCTTCTGCCTGAGAACTGGAAAGGGGTTCCTTATTTCCAAAGATTGGATAAATTAGTTGGAGTTCCGGTCATAAATGTTCACATATGGTTTGACAGAAAACTGAAGAACACCTATGATCACCTTCTCTTTAGCAGAAGTCCCCTTCTGAGTGTATACGCCGACATGTCGGTAACTTGTAAGGAATATTATAACCCAAACCAGTCTATGTTGGAGCTGGTTTTTGCACCAGCCGAAGAATGGATTTCACGTAGCGATGAAGATATTATTGATGCTACCATGTCTGAACTTGCCAAACTATTCCCTGATGAAATTTCTGCAGACCAAAGCAAAGCAAAAATTGTTAAGTACCATGTTGTTAAAACACCAAGGTCGGTTTACAAAACTGTTCCGAATTGTGAACCTTGTCGTCCCATACAAAGATCTCCTATAGAAGGTTTCTATTTAGCTGGAGATTATACAAAACAAAAATATTTAGCTTCCATGGAAGGCGCTGTTCTTTCTGGGAAGCTTTGTGCACAGGCTATTGTACAGGATTCGGAGCTACTTACTGCTCGTGGCCAGAAAAGAATAGCTCAAGCAAGTACTGTTTAA 4365 0.4096 MATPKVLMVAEKPSIALSIASVLSHGQMFTRKGSTEVHEFEGRFLGSPARFKVTSVIGHVFSVDFPGKYQDWAATDPLDLFQAQVLKTESNPKAHICKHLNQEARGCRYLVLWLDCDREGENICFEVIESTGFNIKDVYRARFSAVTEKDVLKALDNLVRPNRDEAMAVDARQEIDLKVGVAFTRFQTSFFQGKYGNLDSRVISYGPCQTPTLGFCVQRYLQINTFKPEKFWSLHPYIIQSGYEIQLEWQRSKLFDINVAMMFQKLVAEDGIFEVAEISEKQETKCRPVGLNTVNLLKVASSALGFGPQMAMQLAERLYTQGFISYPRTESTSYPPSFDFHGALSAQTNNPTWGSYVKGLLTSGYQKPRLGTDAGDHPPITPMKSASEDMLGNDAWKLYQYICQYFIGTVSPDCKYVRKKVEFSVGGEFFHCTGQHVITKGFTAIMPWLSINDKSIPSFTKGQKIKVTKVELYEGSTTPPDFLTESELISLMEKNGIGTDASIPVHINNICERNYVQVVQAGRKLVPTTLGITLIRGYQSIDPDLCLPDIRSFIEQQITLIAKGQVDHHRVVQHVIEQFKQKFCYFVKKIEAMDALFEAQFSALVDSGRILSKCGKCLRYMKYISSQPPRLYCMTCEEVYPLPQKGTIKLYKELSCPLDNFELLICSIPGPEGKSFPLCPYCYSNPPFEGVEELINSAKTSTAGKNGKGAGMACNLCPHPTCPNSLVSQGVCACPECSGTLVLDPISAPNWRLCCNMCNCLVFLAQGAHRISTTKERCPECDSSILEVDFNKKTTPLEDGSTLHRGCILCDPLLHSIVEMKYGRSFKRGRGRGRGRRGAIRDVTGAIVIAMQAPYCIRNWMDFRMTYLTCLYFHRKQTLNFQPYTFFFPLQMALCGSISSPNLNWQIGPRKMFKLGSSMNCDTTISLSFSGSDSMGLNLRFNLASTRVAKTNRFRNHVSPLKVVCIDYPRPEIENTVNFLEASYLSSTFRASPRPTKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEYSRFDFPEVLPSPLNGIWAILRNNEMLTWPEKIKFAIGLLPAMLGGQAYVEAQDGVSVKEWMRKQALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIQSLGGEVHLNSRIKTIELNDDNTVKSFLLNNGKVIEGDAYVSAAPVDILKLLLPENWKGVPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYNPNQSMLELVFAPAEEWISRSDEDIIDATMSELAKLFPDEISADQSKAKIVKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDSELLTARGQKRIAQASTV 1454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01993 1454 PANTHER PROKARYOTIC DNA TOPOISOMERASE 4 835 IPR000380 GO:0003677|GO:0003917|GO:0006265
Car05g01993 1454 Gene3D Topoisomerase I, domain 2 168 583 IPR013824 -
Car05g01993 1454 Gene3D - 1 161 - -
Car05g01993 1454 PRINTS Prokaryotic DNA topoisomerase I signature 321 330 IPR013497 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 PRINTS Prokaryotic DNA topoisomerase I signature 398 414 IPR013497 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 PRINTS Prokaryotic DNA topoisomerase I signature 496 510 IPR013497 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 PRINTS Prokaryotic DNA topoisomerase I signature 110 123 IPR013497 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 PRINTS Prokaryotic DNA topoisomerase I signature 203 221 IPR013497 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 Gene3D - 996 1443 IPR036188 -
Car05g01993 1454 ProSiteProfiles Toprim domain profile. 5 146 IPR006171 -
Car05g01993 1454 SUPERFAMILY FAD/NAD(P)-binding domain 996 1435 IPR036188 -
Car05g01993 1454 PANTHER DNA TOPOISOMERASE 3-BETA-1 4 835 - -
Car05g01993 1454 ProSitePatterns Prokaryotic DNA topoisomerase I active site. 316 330 IPR023406 GO:0003917
Car05g01993 1454 TIGRFAM phytoene_desat: phytoene desaturase 1000 1434 IPR014102 GO:0016117|GO:0016166
Car05g01993 1454 Pfam DNA topoisomerase 161 573 IPR013497 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 Gene3D Topoisomerase I, domain 3 227 480 IPR013825 -
Car05g01993 1454 Pfam Flavin containing amine oxidoreductase 1008 1433 IPR002937 GO:0016491
Car05g01993 1454 SMART topIaneu2 279 535 IPR003602 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 Pfam Toprim domain 6 145 IPR006171 -
Car05g01993 1454 SUPERFAMILY Prokaryotic type I DNA topoisomerase 5 623 IPR023405 -
Car05g01993 1454 SMART toprim5 5 136 IPR006171 -
Car05g01993 1454 Gene3D Topoisomerase I, domain 4 287 412 IPR013826 -
Car05g01993 1454 CDD TOPRIM_TopoIA_TopoIII 5 158 IPR034144 -
Car05g01993 1454 SMART topIban2 137 233 IPR003601 GO:0003677|GO:0003916|GO:0006265
Car05g01993 1454 CDD TOP1Ac 164 583 IPR013497 GO:0003677|GO:0003916|GO:0006265
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01993 Car-Chr5 65247077 65267345 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01993 K03165 - gmx:100791807 1558.12