Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01988 ATGGAATTGCCTCAAGATATTCTTTTAGAGATATTTTCTTGGTTACCAGGCAAGTCTATTTGCAAATTCAAATCATGTTGCATGTCGTTCTCTAACTTTCCAGAAGAAGTCAATTTTAAAATAAAGCAAGCTCGAAATTTGTTGAAGATGGAAGACACATGCTTCTTCATACAACCTGAACAAAAGTGCAAAAAAATAATTGAGTTACATTCTTTACCTAAAGAAAAACAATCTTCGGGTGTTCCTAACAATGTTCTAAAATTCTTATCGAGTTCAGCTAGTGTATTAGCTTCTAGTAATGGTTTAATTCTTTGTTGCAACATAAGTGATCATGACCCTATTGAGTTGTTCATCTGCAATCCAATCACAAAGTCACAGTGTTTTATTCCTACACCCGAGTCACTTCAAGAAAATTATCGCAAAGTCAATATAAATATATTGTTAGACTGCTCTAATGGCTGCGTAGATGATTATAAAGTCTACCTTTTTGAAAATACAATGGAATGGTCACCAACTTGTTATATATGCAAGGTTTATCATGGCAAAGAAGGTGTGTGGAAAACAATGGAAAAAAGTTTCTTTCCTGGTAGTAGAAACATTAAATTTGACATGTCTGTGCTTCACAACGGAGTCATTTATTTTATCTCTGATTGTTCTCCTTACTTTGGTAGATCGAGCCCTTTTTACATGCCTTATATCGTGTCTTACAATTTGGAACATGGAATGTCAACCATCCTTAGGTTGCCGGAAGAAGCAACAAAAGGTTGTCATGAGAATAATGTGTCATGTGACATGGGCATCTTTAAATGGGGTAAACTTACAAATCAAAATCAATCCATCTGTTTGGTGAGATTGAGAGAATGTGTTTTCAATGTATGGTTTTTAAAAGATTGTGAATCAAGTTCATGGCAAAAGGTTTTAGAAGTGAGAGTGAAAGCATTAGGGTTAAAAGAAAAAGACCTTGACGTTAGAGGATTTATGGTTATGAATGGTGATCTTTTAATTTTTGCTACAGAAAATAAGGTTTATAGTTGTGGTTTGAGCGGCGAAAGATTTATGATGGTGGAAGAAATATGCAGCCATAATTGTGGATATAGTATTCGATTAATTCCCTACTTAGATACTCTTCGTTTGTGTGGTACTAATGTTGAAACCATGCCTTGTTAG 1167 0.3436 MELPQDILLEIFSWLPGKSICKFKSCCMSFSNFPEEVNFKIKQARNLLKMEDTCFFIQPEQKCKKIIELHSLPKEKQSSGVPNNVLKFLSSSASVLASSNGLILCCNISDHDPIELFICNPITKSQCFIPTPESLQENYRKVNINILLDCSNGCVDDYKVYLFENTMEWSPTCYICKVYHGKEGVWKTMEKSFFPGSRNIKFDMSVLHNGVIYFISDCSPYFGRSSPFYMPYIVSYNLEHGMSTILRLPEEATKGCHENNVSCDMGIFKWGKLTNQNQSICLVRLRECVFNVWFLKDCESSSWQKVLEVRVKALGLKEKDLDVRGFMVMNGDLLIFATENKVYSCGLSGERFMMVEEICSHNCGYSIRLIPYLDTLRLCGTNVETMPC 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01988 388 TIGRFAM F_box_assoc_1: F-box protein interaction domain 100 338 IPR017451 -
Car05g01988 388 PANTHER PROTEIN, PUTATIVE-RELATED 49 386 - -
Car05g01988 388 Pfam F-box domain 2 33 IPR001810 GO:0005515
Car05g01988 388 SMART fbox_2 3 43 IPR001810 GO:0005515
Car05g01988 388 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 49 386 - -
Car05g01988 388 Gene3D - 1 38 - -
Car05g01988 388 SUPERFAMILY F-box domain 3 32 IPR036047 GO:0005515
Car05g01988 388 ProSiteProfiles F-box domain profile. 1 44 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01988 Car-Chr5 65218321 65219487 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01988 - - mtr:MTR_1g016400 491.886