Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01981 ATGGCTTCTTCTATTAAATTATTAAATATTCTGATATTGATTATTAGCAGCACCTTAGTGGCTACATGTTCTGCCAATTTCTACCAAGATTTTGATCTAACATGGGGTGATCAACGTGCTAAGATATTCAACGGTGGTCAACTTCTATCTCTGTCTTTAGATAAAACATCTGGTTCTGGCTTCCAATCCAAGAAAGAATATTTATTTGGTAGAATTGATATGCAACTCAAACTCGTTGCTGGTAACTCTGCTGGAACCGTCACCGCTTACTACTTGTCATCACAAGGGCCAACTCATGATGAAATTGATTTTGAGTTCTTGGGGAACGTTAGTGGTGACCCTTACATTCTACACACAAACGTATTTTCTCAAGGCAAAGGAAACAGAGAACAACAGTTTTACCTTTGGTTCGATCCCACCAAGAATTTCCACACTTACTCAATCATCTGGAAGCCCCAACACATCATATTCTTAGTTGACAACATCCCTATAAGGATGTTCAAGAATGCTGAATCAGTTGGTGTTCCATTCCCAAAGAACCAAGCAATGAGAATCTATTCAAGTCTTTGGAATGCAGATGATTGGGCCACAAGAGGTGGTTTGGTCAAAACTGATTGGTCCAAAGCACCCTTTACAGCTTACTACCGCAATTTCAAAGCCACTGAACTATCCTCTCTATCTTCCAATTCCTTCTCTGATTCTGCATTACAAAGCAATGAGCTTGATGCTTATGGTAGAAGAAGATTGAGATGGGTTCAAAAGTACTTCATGATATATAACTACTGCAATGATCTTAAACGATTTCCACAAGGCGTTCAAGGTTCTGAGAGATTATAA 837 0.3883 MASSIKLLNILILIISSTLVATCSANFYQDFDLTWGDQRAKIFNGGQLLSLSLDKTSGSGFQSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGDPYILHTNVFSQGKGNREQQFYLWFDPTKNFHTYSIIWKPQHIIFLVDNIPIRMFKNAESVGVPFPKNQAMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKATELSSLSSNSFSDSALQSNELDAYGRRRLRWVQKYFMIYNYCNDLKRFPQGVQGSERL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01981 278 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 15 10 273 - -
Car05g01981 278 SUPERFAMILY Concanavalin A-like lectins/glucanases 27 270 IPR013320 -
Car05g01981 278 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 236 272 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Car05g01981 278 ProSitePatterns Glycosyl hydrolases family 16 active sites. 101 111 IPR008263 GO:0004553|GO:0005975
Car05g01981 278 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 273 IPR044791 GO:0004553
Car05g01981 278 CDD GH16_XET 24 269 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car05g01981 278 PIRSF EndGlu_transf 1 276 IPR016455 GO:0010411|GO:0016762|GO:0042546
Car05g01981 278 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 215 IPR000757 GO:0004553|GO:0005975
Car05g01981 278 Gene3D - 13 276 - -
Car05g01981 278 Pfam Glycosyl hydrolases family 16 28 208 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01981 Car-Chr5 65168070 65169345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01981 6 271 Glycoside Hydrolase AT3G23730 73.118 7.55e-158 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01981 K08235 - gmx:100499905 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01981 05 65168070 65169345 Car05g01981 05 65168070 65169345 ECH