Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01975 ATGTCATTctctcactctcacaatgcactcgcaatcaaatctcaactctGCTCCTTGGCACGTAACAACCCATTCCTCGCCAAGAAACTCCACGCACAAATCATCAAAACCGGTCTCAACCAACACAACCTCTTCCACAAAACTCTCATAGACACGTACGGCAAATGTGGTCTTCTTCAAGATGCACTCCAACTGTTCGACGCATTGCCTCACAGAGACCACGTTGCTTGGGCCACAATCCTCTCCGCCTGCAACCTCTCCAATCTCCCACACCGAGCTATCTCTCTCTCACGCTCCATTCTCCATGAAGGGTTTCAACCAGATCACTTCGTTTTCTCTTCCCTCATCAAAGCATGTGCTAACTTGGGTTCTTTTCATATCAAACAAGGGAAACAACTCCATGCTCGTTTCTTGCTCTCACCTTTCTCGGATGATGACGTTGTTAAGTCTTCTCTTGTTGATATGTATGCTAAATTTGAGTTGCCCGATTATGGGCGTGCTGTTTTTGATTCAATTTATTCGTTGAATTCGATTTGTTGGACTGCAATGATATCTGGGTATGCACGAAGTGGACGAAAGGCTGAGGCTTTTCGAATGTTTCGTCAATCTCCATTTAGAAATTTGTATGCTTGGACTGCTTTGATATCTGGGTTGGTTCAGAGTGGGAATGCAAATGATGCACTTTACTTGTTTGTTGAAATGAGGCGTGAAGGGATTAGTATAACTGACCCTCTAGTTCTTTCAAGTGTGGTGGGTGCTTGTGCTAATTCAGCTGTTTGGGTGCTTGGGAAACAGATGCATAGTGTTGTTATAACACTTGGATATGAGTCTTGTTTATTTATAAGCAATGCACTTGTGGATATGTATGCCAAATGCAGTGACCTTGTTGCTGCAAAATGTATATTCAATAAGATGAGAAGAAAGGATGTTGTTTCTTGGACTTCAATAATTGTTGGCACTGCTCAGCATGGGCTGGCTGAGGAGGCGTTGGCTTTGTATGATGACATGGTTTTGGCTGGTGTTAAGCCAAATGAGGTGACTTTTGTTGGCTTGATCTATGCCTGCAGTCATGTTGGTTTAGTTAGCAAGGGTCGTGCTTTGTTCAAGTCTATGGTTGAAGATTTTGGAATTAGGCCATCTTTGCAGCACTATACTTGTTTGCTGGATCTTTTTAGTCGATCGGGGCACCTTGACGAGGCAGAGAGGATTGTCAGAACAATGCCGGTCAAACCTGATGAACCTACTTGGGCTGCTTTACTCAGTGCTTGTAAGCATCACGGTAACACTCAGATGGCAGTTAGGATTGCTGATCATCTGTTGGAGTTAATACCAGAAGACCCTTCCTGCTACATATTGTTGTCTAATGTATATGCCGGAGCTGGTATGTGGGAGAATGTTTCAAAGGTGCGGAAGTTAATGGCGGTCAAGGAAGTTAAAAAGGAGCCAGGTTATAGTGGCATTGACTTGGGAAAGGAAAGCCAGGTATTTTACGCCGGAGAGACATCTCATTCAATGAAGGATGAGATGCTAGGTTTATTGAGGAAATTAGATGCAGAGATGAGGAAAAGGGGTTATGTTCCTGATACTAGCTCAGTTTTACACGACATGGATCAACAAGAGAAGGAAAAACAACTTTTCTGGCACAGTGAGAGGTTAGCTCTGGCCTATGGACTTCTTAAGGCTGTTCCGGGGACTATTATACGCATAGTGAAAAATCTTCGTGTTTGTGGAGATTGTCACACTGTGCTGAAGCTCATCAGCACTATAACAAGTAGGGAAATTTATGTACGAGATGCCAAAAGATATCACCATTTTAAGGATGGGAATTGTTCATGCAATGACTTCTGGTGA 1851 0.4236 MSFSHSHNALAIKSQLCSLARNNPFLAKKLHAQIIKTGLNQHNLFHKTLIDTYGKCGLLQDALQLFDALPHRDHVAWATILSACNLSNLPHRAISLSRSILHEGFQPDHFVFSSLIKACANLGSFHIKQGKQLHARFLLSPFSDDDVVKSSLVDMYAKFELPDYGRAVFDSIYSLNSICWTAMISGYARSGRKAEAFRMFRQSPFRNLYAWTALISGLVQSGNANDALYLFVEMRREGISITDPLVLSSVVGACANSAVWVLGKQMHSVVITLGYESCLFISNALVDMYAKCSDLVAAKCIFNKMRRKDVVSWTSIIVGTAQHGLAEEALALYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAERIVRTMPVKPDEPTWAALLSACKHHGNTQMAVRIADHLLELIPEDPSCYILLSNVYAGAGMWENVSKVRKLMAVKEVKKEPGYSGIDLGKESQVFYAGETSHSMKDEMLGLLRKLDAEMRKRGYVPDTSSVLHDMDQQEKEKQLFWHSERLALAYGLLKAVPGTIIRIVKNLRVCGDCHTVLKLISTITSREIYVRDAKRYHHFKDGNCSCNDFW 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01975 616 Gene3D Tetratricopeptide repeat domain 281 502 IPR011990 GO:0005515
Car05g01975 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Car05g01975 616 Pfam PPR repeat family 308 356 IPR002885 -
Car05g01975 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Car05g01975 616 PANTHER OS11G0661000 PROTEIN 17 604 - -
Car05g01975 616 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Car05g01975 616 TIGRFAM PPR: pentatricopeptide repeat domain 178 202 IPR002885 -
Car05g01975 616 TIGRFAM PPR: pentatricopeptide repeat domain 311 345 IPR002885 -
Car05g01975 616 TIGRFAM PPR: pentatricopeptide repeat domain 346 380 IPR002885 -
Car05g01975 616 Pfam PPR repeat 384 407 IPR002885 -
Car05g01975 616 Pfam PPR repeat 210 239 IPR002885 -
Car05g01975 616 Pfam PPR repeat 48 68 IPR002885 -
Car05g01975 616 Pfam PPR repeat 179 202 IPR002885 -
Car05g01975 616 Pfam DYW family of nucleic acid deaminases 524 616 IPR032867 GO:0008270
Car05g01975 616 Pfam E motif 426 487 IPR046848 -
Car05g01975 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Car05g01975 616 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 604 - -
Car05g01975 616 Gene3D Tetratricopeptide repeat domain 140 260 IPR011990 GO:0005515
Car05g01975 616 Gene3D Tetratricopeptide repeat domain 4 138 IPR011990 GO:0005515
Car05g01975 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 206 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01975 Car-Chr5 65083383 65085955 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01975 23 616 Glycoside Hydrolase AT3G49170 36.634 1.96e-131 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01975 - - mtr:MTR_3g084440 1079.7