Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01972 ATGAAAGTTCTTTTTGCTATTCTTCTATTGTTTTTCATTGCTTCACCTAGCTTGGTAAAAATTAATGCAGCTAATGATCTTTGCTTCAATGTTTTTCAGTATGGTGCCAAGGGTGATGGTGTTGCCGATGATTCAAatGCTTTTCTGAAAGCATGGCAAGATGTTTGTGCTGCAGAGGATACACCAACACTATTCATACCCGATGGCAGCACATTCATGTTGCAACCTGTGTCGTTTTCAGGTCCTTGCAAATCTGCAACCGTTAACGTTGTGCTTGAAGGAACTCTCTTAGCCCCAGGAAGTGTTGAGAATTGGGATTGGACAACTAGTCGTAACACTGAAGCATGGATCCAATTCAGACACATAAATGGTCTTGTTGTTTATGGAGGAGGAACAATTGATGGCCAAGGTGCTCCCTGGTGGATAAAGTATGGCAAAAATGACCAAGACAGGCCAAGGGCTCTTCAATTTTCTGGTTGTGATAATTTACAACTTGCCGGGTTGACTCACGTAAATAGTCCAAAAAATCATATAAGCATAGATTCATGCAACGGTGTTGCTGTATCCGATCTTTATATAACTGCACCAGAAAGTAGTCCCAACACTGATGGGATTGATATTGCATCATCATCCAACGTCTTCATTGATCGTTTAAAGATTGCAACTGGTGACGATTGCATCGCCATTAACGCTGGCTCAAGCCAGATCAACATAACTGGTATTTTTTGTGGACCTGGCCATGGCATCAGTGTTGGTAGTCTTGGAAAAGGTAAAAGTTATGCTACGGTAGAAGAGGTATATGTAAAAAATTGCACCTTTACTGGAACTTCAAATGGAGCTAGAATCAAGACATGGAAGGGAGGTAGTGGGCATGCGTGGAATATCAAATACGAAGATATTAAACTTGATGGAGTAAAGAATCCAGTAATTATTGATCAAAATTATGACCCTTTATTATCTGATATGATTGGTAGTGCAGTTGAAGTGAAAAATGTTACATACAACAACATAAAAGGAACCTCAATTAATGGACATGCAATCCAATTTTTTTGCGATTCCAACATTGGGTGCACCAACATTGTATTAAACGATATAAACATCACAAAGGTTGATGGAGGCGAAACACATGCATCTTGCAATAATGCTCACGGAACGTACTCATCGTGTTATCCACCCGTCTCATGTTTTTCTTAA 1194 0.397 MKVLFAILLLFFIASPSLVKINAANDLCFNVFQYGAKGDGVADDSNAFLKAWQDVCAAEDTPTLFIPDGSTFMLQPVSFSGPCKSATVNVVLEGTLLAPGSVENWDWTTSRNTEAWIQFRHINGLVVYGGGTIDGQGAPWWIKYGKNDQDRPRALQFSGCDNLQLAGLTHVNSPKNHISIDSCNGVAVSDLYITAPESSPNTDGIDIASSSNVFIDRLKIATGDDCIAINAGSSQINITGIFCGPGHGISVGSLGKGKSYATVEEVYVKNCTFTGTSNGARIKTWKGGSGHAWNIKYEDIKLDGVKNPVIIDQNYDPLLSDMIGSAVEVKNVTYNNIKGTSINGHAIQFFCDSNIGCTNIVLNDINITKVDGGETHASCNNAHGTYSSCYPPVSCFS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01972 397 SUPERFAMILY Pectin lyase-like 15 396 IPR011050 -
Car05g01972 397 ProSitePatterns Polygalacturonase active site. 240 253 IPR000743 GO:0004650|GO:0005975
Car05g01972 397 Gene3D - 15 393 IPR012334 -
Car05g01972 397 PANTHER - 22 396 - -
Car05g01972 397 Pfam Glycosyl hydrolases family 28 56 385 IPR000743 GO:0004650|GO:0005975
Car05g01972 397 SMART pbh1 263 284 IPR006626 -
Car05g01972 397 SMART pbh1 292 313 IPR006626 -
Car05g01972 397 SMART pbh1 183 209 IPR006626 -
Car05g01972 397 SMART pbh1 210 231 IPR006626 -
Car05g01972 397 SMART pbh1 233 253 IPR006626 -
Car05g01972 397 PANTHER - 22 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01972 Car-Chr5 65015011 65043799 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01972 4 385 Glycoside Hydrolase AT5G17200 46.078 4.30e-115 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01972 K01184 - ming:122078589 410.609