Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01952 ATGGATTTCATCGAGCTAGAAGCAGTAGAAGGCCTCCGTTGGTCATGGAATTCATGGCCATCATCAAAATCAGAACTCATAATCCCACTAACCATCATGTGCACACCCTTAACCCAACAAGGCACAGACCTACCTCTTCTCCCTTACGATCCCCTCTCATGCACTCGATGCGGCGCCGTTTTGAACCCATACGCTCGTCTCGATTATCAATCACGTATCTGGCACTGTCCCTTTTGTTCTCAACGAAACCCTTTCCCTCGTTCTATTGCTGATACTAATCTACCTGCGGAACTCTTTCCTACTTATACAACTGTTGAGTACAATTCGCCTTCGCTGTTTCATCCTCCGGCTTTTGTTTTTGTTATTGATGTTTCTTCTTCTGAAGATGATCTTCGTCCCCTTAAGAATGAGATTCTGCTTCTTCTTCATCATTTGCCTGATAATGCTCTTGTTGCTTTGATTACTTTTGATTCCATGGTTTCTCTTCATGATCTTCACTTTTCTCACTGTTCTAGGCTTGTTGTTTTGCACGGTGACCGTCAACTTTCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCAGATACGGCAGTTTCTCAACATTAGCCGTCCGCACCAGCTGCTTATTGGACAAACACAACCTGTCCGTCAGCCGTCCCCCGAGGGCCACTGGAGCTGCAATTTCAGCTGCCCTTGGACTTTTAGAGTGTTGTTTTGTAAATACTGGCTCCAGGATCATGCTCTTCACTTCTGGACCTGCTACTCTTGGACCTGGTATGGTTGTGGACTCTGATTTCCGGCAAACTATGAGAACCCACAATGATATTTTCAGTGGGCAAGTGAGACACCATGCTAAGTCTTGCAGTTTCTACAGACAGATTGCCAAGAGTCTGACTGATGTGTCTGTTGTTCTTGATGTGTTTGCTTGCTCCCTTGACCAAGTTGGAGCTGCCGAGCTTCGAGAACCTGTTGAGCGCTCGGGTGGATTTATGATTCTCGCTGAATCCTTTGAATCTGATCAATTCAAGAAATGTCTAAGGCACTTGTTTAAATGTGACGACGAGGGCTTTTTGAAGATGAATTTTGATGCAACCATTGAAATAGTGACCACTAAAGATGTCAAAATCTCTGGAGCTCTTGGACCTTGTGTGTCTCTTAATAAAAAGAACAGTTCAGTGAGTGAGGCAGAAGTTGGACAAGGTGGTACCTATGTGTGGAAGTTGAATACACTCACTGAGCGAACTTGCATCGCTTTTTTCTTCCAAGTGAGTGATGAGCAAAAAATTCAGCCTGGCTCTGCATTTTTAATTCAGTTTATAACACGGTACAGGCAGGGGAACATGGTACTCCGAAAAAGAGTCACCACTGCTGCGAGAAGGTGGGTTGCAAACCACTCTACAGATATTGCTGCTGGGTTTGATCAAGAAGCAGCCGCTTCAGTTATGGCAAGACTTGCTATTCTCCGAGCAGAGACATGCCATGCCCGTGATGTCATCAGATGGCTTGATGACACACTCATTCGTTTTACCGCTAAGTTTGGGGACTATGTGCCAGAAGATCCTTCTTCCTTCCGTTTATCTTCCAACTTTTCCCTTTATCCCCAGTTTATGTTCCACTTAAGGAGATCCCAATTTATCGATGTCTCTAACACTACTCCTGATGAAACTGCATATTTCCGGCTTATGCTGAACCGAGAGGGAGTAGTGGGCTCTCTTATAATGATTCAACCTACACTTTTCCAATATTCATTTGATGGGCCACCTGTTCCAGTACTTTTAGATATTCGTTCCATTTGCCCTGATTCTATCTTGCTCTTTGATTCTTTCTTCCTTGTGGTGATTCATTATGGGTCCAAGATTGCTCAGTGGAAGAAGGTTGGTTATGATAAGGACCCAAATCATGAGAACTTTAGAAAGCTGTTGGAAGCCCCAGAACTGGATGCAGAGCAATTGGTGGCTGAAAGGGTTCCAGTGCCAAAGATTATAAGATGTGACCAGCATAGTAGTCAGGCTAGGTTTCTTCTTGCCAAGTTGAATCCATCTGTTACTCAAAATTCAACATACACAGATGGTTCAGATATCATCTTTACTGATGAGTTGAGCTTGCAAGTTTTTCTAGATCAATTGCAGATACTGGCAGTGCAAGGCTGA 2178 0.4302 MDFIELEAVEGLRWSWNSWPSSKSELIIPLTIMCTPLTQQGTDLPLLPYDPLSCTRCGAVLNPYARLDYQSRIWHCPFCSQRNPFPRSIADTNLPAELFPTYTTVEYNSPSLFHPPAFVFVIDVSSSEDDLRPLKNEILLLLHHLPDNALVALITFDSMVSLHDLHFSHCSRLVVLHGDRQLSXXXXXXXXXXXXXXXXXXPIRYGSFSTLAVRTSCLLDKHNLSVSRPPRATGAAISAALGLLECCFVNTGSRIMLFTSGPATLGPGMVVDSDFRQTMRTHNDIFSGQVRHHAKSCSFYRQIAKSLTDVSVVLDVFACSLDQVGAAELREPVERSGGFMILAESFESDQFKKCLRHLFKCDDEGFLKMNFDATIEIVTTKDVKISGALGPCVSLNKKNSSVSEAEVGQGGTYVWKLNTLTERTCIAFFFQVSDEQKIQPGSAFLIQFITRYRQGNMVLRKRVTTAARRWVANHSTDIAAGFDQEAAASVMARLAILRAETCHARDVIRWLDDTLIRFTAKFGDYVPEDPSSFRLSSNFSLYPQFMFHLRRSQFIDVSNTTPDETAYFRLMLNREGVVGSLIMIQPTLFQYSFDGPPVPVLLDIRSICPDSILLFDSFFLVVIHYGSKIAQWKKVGYDKDPNHENFRKLLEAPELDAEQLVAERVPVPKIIRCDQHSSQARFLLAKLNPSVTQNSTYTDGSDIIFTDELSLQVFLDQLQILAVQG 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01952 725 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 586 724 IPR036180 -
Car05g01952 725 Pfam Sec23/Sec24 beta-sandwich domain 371 471 IPR012990 -
Car05g01952 725 SUPERFAMILY Zn-finger domain of Sec23/24 43 111 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Car05g01952 725 Pfam Gelsolin repeat 597 683 IPR007123 -
Car05g01952 725 SUPERFAMILY vWA-like 115 359 IPR036465 -
Car05g01952 725 Pfam Sec23/Sec24 helical domain 483 579 IPR006900 GO:0006886|GO:0006888|GO:0030127
Car05g01952 725 Pfam Sec23/Sec24 trunk domain 227 355 IPR006896 GO:0006886|GO:0006888|GO:0030127
Car05g01952 725 Pfam Sec23/Sec24 trunk domain 114 169 IPR006896 GO:0006886|GO:0006888|GO:0030127
Car05g01952 725 Gene3D - 6 468 - -
Car05g01952 725 SUPERFAMILY beta-sandwich domain of Sec23/24 2 482 - -
Car05g01952 725 Gene3D Sec23/Sec24 helical domain 480 722 - -
Car05g01952 725 Pfam Sec23/Sec24 zinc finger 51 87 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Car05g01952 725 Gene3D - 48 104 - -
Car05g01952 725 Gene3D Severin 585 689 IPR029006 -
Car05g01952 725 Gene3D von Willebrand factor, type A domain 115 369 IPR036465 -
Car05g01952 725 SUPERFAMILY Helical domain of Sec23/24 483 585 IPR036175 GO:0006886|GO:0006888|GO:0030127
Car05g01952 725 CDD Sec23_C 575 695 IPR037550 GO:0030127|GO:0090114
Car05g01952 725 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 725 IPR037364 -
Car05g01952 725 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 725 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01952 Car-Chr5 64804556 64807484 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01952 K14006 - gmx:100784000 1119.76