Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01946 ATGTGCCCAGTCTCATTTTACGCGACTTATTCAACCGTGGTGGCTCCTTCTTGTTCATTCCCTTGTTCCTCTTCCAAAACTAGCATTACCATCCCAACCACTGTTTCTACTAAATCCATATCAGCCAAAGATGTGTGGACCCGAACCCCCCGTTCTCCGTTTTCcaacacacaacaacaacaacgtcgtactcgaacccaacaacaacaacaccaacCCACCTACTTAGACCGCACCGTCAACATGAACGAACTATTAACCTCAATCGGACAAACCCAAAACGTCCAACAACTTCACGCCGTTATGTCCCCTTACAACGGAACAAACCTATCCATTCGTTTCATGGTTTCCCTTCTCTCCCGTGAACCCGATTGGCAACGCGCTCTCGCACTTCTCGATTGGATGAACGAAAAAGCTCGTTATTCACCTTCCGTTTCCGCTTACAACGTCGTTCTCCGTAATGTCCTACGTGCTAAACAGTGGCTTTTTGCACACGGACTGTTTGATGAAATGCGTCAAAAGGGTATTTCACCTGATAAGTACACTTACTCAACCCTCATTACTCATTTCGGTAAACATGGCTTATTTGATTCCTCTTTCTTTTGGCTTCAACAGATGGAACGTGACAATGTTTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGCTTTCGCGTAAGTTGTGTGATTATTCCAAAGCTATTTCCATTTTCAATACGTTAAAAGCTTCTGCTAATATTGTACCTGATCTTATTGCTTATAACACTATGATTAGTGTGTTTGGTAAGGCAAAACATTTTCGTGAAGCTCGCCTTCTTCTTCAAGAAATGAGGGACAATGGTGTTAACCCCAACACTGTTAGTTACTCGACGCTTCTTGCGATTTATGTTGATAATCAGAAGTTTGTGGAGGCACTTTCTTTGTTCTCTGAAATGAATGAAACTGAATGTGTACTTGATCTCACTACTTGTAATATCATGATTGATGTTTATGGCCAGCTTCACATGATCAAGGAAGCTGATTGCTTCTTTTGGGGTATGAGGAAAATGGGAATTGAACCCAATGTGGTTAGTTACAACACTATCTTGAGGGTTTATGGAGAGGCTGAGTTATATGGGGAAGCTGTTCATTTGTTTAGTTTGATGCAAAGGAAGGGTGTACCACAGAATGTTGTCACCTACAACACCATGATTAGTATTTATGGAAAATCTCTTGAGCACGAGAAGGCGACAAATCTCATTCAAGAAATGCAGAGTAGAGGTGTTCAACCAAATGCCATCACTTATTCAACCATAATATCTATATGGGAAAAAGCAGGGAAATTGGATAGGGCAGCCATGCTGTTTCATAAGTTAAGGAGTTCTGGAGTTAAAATTGATGATGTTCTGTATCAGACAATGATTGTGGCATATCAGAAGGCTGGTTTAGTTGCTCATGCTAAAAGGCTACTTCATGAACTCAAGCAACCCGATAACGTTTCTAGGGAGACGGCTATCACAGTACTTGCCAGAGCAGGTAAAGTTGACGAGGCTATGTGGGTTTTCCGGCAGGCTTTTGATGCTGGTGAGGTGAAAGATATATCTGTATTTGGGTGCATGATTGATGTTTTCTCAAGGAACAGAAAGTATGCACATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGTTTGGACATTTTCCTGATTCTAATGTTATTGCTCTTGTGCTGAATGCTTTCGGAAAGCTGCGCAAGTTTGAGAAAGCAGATGCTTTATATAAACAGATGTATGAAAAAGGGTGTGTTTTCCCGGACGAAGTTCATTTTCAGATGCTCAGTCTATACGGCGCAAGAATGGATTTCACGAGGGTGGAATCGTTGTTTGAGAAGATAGATTCCCATCCCAATATCAACAAGAAAGAGTTGTATTTTGTTGTTGCCAACATTTATGAAAGAGCAGATAGATTTAACGATGCTTCCAGAATCATGAACAGGTTGAATCACAAAGCAATTAGAAGTCATGATAATGCTTAG 2010 0.3985 MCPVSFYATYSTVVAPSCSFPCSSSKTSITIPTTVSTKSISAKDVWTRTPRSPFSNTQQQQRRTRTQQQQHQPTYLDRTVNMNELLTSIGQTQNVQQLHAVMSPYNGTNLSIRFMVSLLSREPDWQRALALLDWMNEKARYSPSVSAYNVVLRNVLRAKQWLFAHGLFDEMRQKGISPDKYTYSTLITHFGKHGLFDSSFFWLQQMERDNVSGDLVLYSNLIELSRKLCDYSKAISIFNTLKASANIVPDLIAYNTMISVFGKAKHFREARLLLQEMRDNGVNPNTVSYSTLLAIYVDNQKFVEALSLFSEMNETECVLDLTTCNIMIDVYGQLHMIKEADCFFWGMRKMGIEPNVVSYNTILRVYGEAELYGEAVHLFSLMQRKGVPQNVVTYNTMISIYGKSLEHEKATNLIQEMQSRGVQPNAITYSTIISIWEKAGKLDRAAMLFHKLRSSGVKIDDVLYQTMIVAYQKAGLVAHAKRLLHELKQPDNVSRETAITVLARAGKVDEAMWVFRQAFDAGEVKDISVFGCMIDVFSRNRKYAHVVEVFEKMREFGHFPDSNVIALVLNAFGKLRKFEKADALYKQMYEKGCVFPDEVHFQMLSLYGARMDFTRVESLFEKIDSHPNINKKELYFVVANIYERADRFNDASRIMNRLNHKAIRSHDNA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 425 459 IPR002885 -
Car05g01946 669 PANTHER OS03G0856100 PROTEIN 31 662 - -
Car05g01946 669 Pfam Pentatricopeptide repeat domain 307 368 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 144 178 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Car05g01946 669 Pfam PPR repeat 529 557 IPR002885 -
Car05g01946 669 Pfam PPR repeat 499 517 IPR002885 -
Car05g01946 669 Pfam PPR repeat 462 488 IPR002885 -
Car05g01946 669 Pfam PPR repeat 568 593 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Car05g01946 669 MobiDBLite consensus disorder prediction 42 73 - -
Car05g01946 669 SUPERFAMILY HCP-like 425 456 - -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 285 319 IPR002885 -
Car05g01946 669 Gene3D Tetratricopeptide repeat domain 80 226 IPR011990 GO:0005515
Car05g01946 669 Gene3D Tetratricopeptide repeat domain 227 331 IPR011990 GO:0005515
Car05g01946 669 Pfam PPR repeat family 390 433 IPR002885 -
Car05g01946 669 Pfam PPR repeat family 143 190 IPR002885 -
Car05g01946 669 Pfam PPR repeat family 249 293 IPR002885 -
Car05g01946 669 Gene3D Tetratricopeptide repeat domain 491 668 IPR011990 GO:0005515
Car05g01946 669 Gene3D Tetratricopeptide repeat domain 344 490 IPR011990 GO:0005515
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Car05g01946 669 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 561 595 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 323 356 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 529 562 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 392 426 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 568 597 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 287 320 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 147 179 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 357 390 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 427 460 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Car05g01946 669 TIGRFAM PPR: pentatricopeptide repeat domain 181 214 IPR002885 -
Car05g01946 669 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 31 662 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01946 144 635 Glycosyltransferase AT1G05670 22.984 4.42e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01946 - - mtr:MTR_3g083680 1113.98