Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01944 ATGAGTTTAACATTTTCTCTGGAAGCAAAGCCTTTCATCATAAATAGTAAAAGGAAACCATGTTGTAGAAGATATGATGTTATAAGATCAGAATTAACCATGGCTCCAAAACATAGAAAAATGACTATGTTTCCTCAGTTGTCAAAACAAGGAGTTTCTATTGCTGATTTACATGTTCAAGAAGTTGTTGACAAACAGTCTCAGACAGTCAATTTTGACACACTTTGTCCTAGTTTCAAGCCGCGGTTCGAGCCTAGTTTTCTCAATGACGCCTATGAAATGTGTAGAAATATATGCGCGGAGTATGCCAAAACATTCTATCTAGGAACTTTGCTTATGACTGAAGAAAGACAAAAGGCAATATGGGCTATCTATGTTTGGTGCAGGAGGACAGATGAGCTTGTTGATGGTCCTAATGCTGACTATATGAGCTCTGCTGTTCTTGACAGATGGGAAGATAGATTAGATGACATTTTCAATGGACATCCATATGATATGCTTGATGCTACTCTTACTGATACAATCTCCAAATTTCCCTTGGATATTAAGCCTTTTAGGGACATGATAGAAGGTATGAGAATGGATACAAGGAAATCGCGATACAAAAATTTCGAAGAACTATATCTATATTGCTATTATGTGGCTGGAACTGTTGGGTTGATGAGTGTTCCAATAATGGGAATAGCCCCTGAGTCTCTAATCCCTGCTCAAAATGTATATCAATCAGCATTATATCTTGGCATTGGAAATCAACTCACAAATATTCTTAGAGATGTAGGGGAGGATGCATTAAGAGGTAGAGTGTACCTTCCAGAAGATGAACTTGGTGAGTTTGGTTTATGTGACAAAGATGTTTTCTCAAGAAAGGTGAGTGAAAGATGGAAAGAGTTTATGAAACAGCAAATTGCAAGGGCAAGATTTTACTTCAATTCAGCTGAAGAAGGAGCTTCACATCTTGACAAGGCTAGCCGTTGGCCGGTTTGGTCATCATTAATATTGTACCGCAAGATCTTGGATGCAATTGAAGAGAACGAATATGACAATTTGACAAAACGTGCTTATGTAGGAAGAACTAAGAAATTTTTGTCATTGCCTCTGGCTTATAGTAGATCTCTTTCAATTCCCAAAACCAAATTAAATCCTTCCTTCACAAGGCTTATCTAG 1164 0.3754 MSLTFSLEAKPFIINSKRKPCCRRYDVIRSELTMAPKHRKMTMFPQLSKQGVSIADLHVQEVVDKQSQTVNFDTLCPSFKPRFEPSFLNDAYEMCRNICAEYAKTFYLGTLLMTEERQKAIWAIYVWCRRTDELVDGPNADYMSSAVLDRWEDRLDDIFNGHPYDMLDATLTDTISKFPLDIKPFRDMIEGMRMDTRKSRYKNFEELYLYCYYVAGTVGLMSVPIMGIAPESLIPAQNVYQSALYLGIGNQLTNILRDVGEDALRGRVYLPEDELGEFGLCDKDVFSRKVSERWKEFMKQQIARARFYFNSAEEGASHLDKASRWPVWSSLILYRKILDAIEENEYDNLTKRAYVGRTKKFLSLPLAYSRSLSIPKTKLNPSFTRLI 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01944 387 CDD Trans_IPPS_HH 93 360 IPR033904 GO:0004311
Car05g01944 387 PANTHER BIFUNCTIONAL LYCOPENE CYCLASE/PHYTOENE SYNTHASE 1 378 - -
Car05g01944 387 SFLD Isoprenoid Synthase Type I 89 369 - -
Car05g01944 387 ProSitePatterns Squalene and phytoene synthases signature 1. 210 225 IPR019845 GO:0016765
Car05g01944 387 SFLD Phytoene synthase like 89 369 IPR044843 GO:0004311
Car05g01944 387 PANTHER PHYTOENE SYNTHASE, CHLOROPLASTIC 1 378 - -
Car05g01944 387 ProSitePatterns Squalene and phytoene synthases signature 2. 246 271 IPR019845 GO:0016765
Car05g01944 387 Gene3D Farnesyl Diphosphate Synthase 85 365 IPR008949 -
Car05g01944 387 Pfam Squalene/phytoene synthase 102 357 IPR002060 GO:0009058
Car05g01944 387 SUPERFAMILY Terpenoid synthases 90 372 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01944 Car-Chr5 64736429 64738860 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01944 K02291 - gmx:100782394 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01944 05 64736429 64738860 Car05g01944 05 64736429 64738860 ECH