Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g01942 ATGAAGCTTCAAAGATTGCTCACCACTGTTTTGTTGCTCACTGTTACTACTCTAAACAACGTGTTAGGTGCATTTGTGGGGGTAAACATAGGCAGTGATGTTTCTGATCTACCATCAGCTTCAAATGTGGTTACTATTCTAAAATCTCATCAAATTACTCATGTGCGTCTCTATGATGCCAATCCTCACATGCTACAAGCACTTTCAAACACAGGCATTGAAGTCCTTGTTGGTGTCACTGATGAGGAGATACTAACAATTGGAGATTCTCCATCTGTTGCTGCATCATGGATCACCAAAAATGTAGCTGCATATATGCCTCATACAAATATCACATCAATAGCAGTTGGTAGTCAAGTTCTTACTTCGATCCCAAATGTTGCTCCTGTTCTTGTTCCTGCAATGAATCATCTTCACAGTGCTTTGGTTGCTTCAAATCTTCACTTTCGTGTTAAAGTTTCCACGCCTCAGTCTATGGATTTAATCCCTAGGCCTTTTCCTCCTTCAACTGCAACTTTTAACTCGTCATGGAACTCCACAATTCACCAACTCCTTCAGTTTTTGAAGAATACTAATTCTTCTTATATGTTAAATGCTTATCCTTATTATGGATATACTAATGGTGATGGCATTTTCCCAATTGAATATGCTTTACTTAGATCCCTTCCTTTGGTTAAGAAAATTGTTGATCCAAACACATTGTTACATTATGATAGTATGTTTGATGCTATGGTCGATGCTACTTATTATTCTATACGTGCCTTAAATTTCAATGATATACCGATTGTTGTCACCGAATCTGGCTGGCCATCTTTAGGTGGATCAAATGAACAAGATGCTAATGTAGAAAATGCTGAGACCTATGTTAATAATTTGATTCTCCGAGTACTCAACGATTCAGGTCCTCCTAGTCAGCCAAAGATACCGATTAATACCTACATATATGAATTGTTTGATGAAGACATGAGGAAAGGACCTATATCTGAAAGACATTGGGGACTTTTTTATTCTAATGGAAGTTCTGTTTACCCTTTGAGTTTTACTGGTTCTGACAAGATTTTTGGAAACTCTTCAATGTCTTTTTGTGTGGCTAAAGATGGCGCGGACGCTGAAAAGATCGAAGCTGGTTTGGACTGGGCTTGTGGACAAGGCAGGGCTAACTGTGCAGCTATTCAAGCAGGGAGACCTTGCTTTTTCCCTAATAATGTGAAAAGTCATGCCTCTTATGCTTATAATGATTATTATCAGAAAATGCATAGTGCTGGTGGAACATGTGATTTCGATGATACTGCTATAATAACTACCGAGGATCCAAGTTATGGATCATGTATATATGCAGGAAGTTCTAATTTAAGCACTGGTGATGGGAGCTTGCCTTCTATGGCACTTGGACCTGTAGGTCCTGTTGGTGTAGGGGAGAGAGGGGCTCTTCCTCCTCACTCACTCCGCATCTTTCAATCTCCTATTTTCGATTCTCTTCATTCTCCTTCCACTTCCACACACAGTTTCAAGACTCTTGTTTCAAATCTTCCTCTTGCCCCTCCTGATTTTGCAGGAACAATGGGGAAAAAAGTGAATAGGAAAACTCGAAGTGCTGTTAAAGAGAAGGTGGTTGCTATTGGTTCGTCGCCAAAAAATATTACGGAATCGTGCAACCCAGCAATTGAGGCTGTTGATGAGGGGGCTTCAGTTGCAAAAGAGACAATTTCTTGCCCTCATCTTGTTAAAGGTGTTAATTTAGATAAATTGTCTGATAAGATTAAGTCTTCTGGATCCATAAGGTGTGAAGATTGTAGACAAGGGGCGGTTGATAGGAGGGGTGGAAGAGGAAAAGGTAAACATGGGAAGAAGAAAGGCAGTGCATCATTAGACTCAAAATCTGATTTGAAGTCTATATGGGTCTGCTTGGAGTGTGGTCAACATACCTGTGGAGGTGTAGGGTTACCAACGACCCCTCATTGTCATGCAGTTGGGCATGCGAGGAAAACTCGACACCCATTAGTGGTTCATTTTGAAAAACCTCAACTGTGTTGGTGCTTTCCTTGCAATATGCTTATCCAAGTTGATAAAATTGAAAAAACTGATGAAGCAAGTCATTCTATATCTGATGTTGTGAAATTGTTTAAAGGACGATCATCAGAAAAATCGTCAGTGGATATTGAGGATGTTTCCATTGGGGATGGCAGTGTTACTTCAGAAATTAAGTCAAAATCTTCGATCACAAGTGATTCATATGGACAAGGTTGTTATGTAGTTCGGGGCATGGTTAATCTTGGGAATACATGTTTCTTTAATTCAATTATGCAAAATCTGCTTGCTATGAATAAATTGCGGGACAATTTTCTAGAGCTAGATGCTCCTGTTGGGCCACTGATTAGTTCGTTGAAGAAGTTGTTCACTGAAACTAACCCAGAATTAGGATTCAAAAACACTATAAATCCAAGATCCTTTTTTGGTTCTGTATGTACTAAGTCTCCCCAATTTCGAGGATATCAACAACATGACAGTCACGAATTACTCCGTTGTTTACTGGATGGGTTGAGTACTGAAGAACTAGCTGGAAGGAAGCAGAATGGTTCTCTCAAGACAGATAGGGCCTCTTCCAATACTTTAGTTGATGCTTTATTTGGGGGTCAGATATCTAGTACTGTGTGTTGCAATGAATGTGGGCACTCCTCAACAGTGTATGAGCCATTTTTAGATCTTTCCCTCCCTGTTCCAAATAAGAAACCTCCACCTCGGAAGGCTCAACAAGTATCCCGAACCAAAAAGACAAAACTTCCACCAAAGAAAGGGGGAAAGTCTCGAGTCAAAGTTAGCAAGGATGCTGATCTCTTACCTGTTAAAAATGTACCAAGCCAATCTTCCAGCCATGAATCATCCTGCCCTGATCAGTCTGTCATATCAAATGCTGAAGAAATGGTGGCTTCTTCTGGTGATTCTACAGTATTAGGTTCTGAAGAAATAAGCAGTGTGGCCAATAAAGAGGACTTATTGCCACCTAATTTGGTTACTGTTGGAGAGTCTCAACAAATGCAAGTGCTTGACAATGATGCAAATAAAACGTCAGAATTATCAGATGATTTTGTATGGTTGGATTATGTGGAAGCTGAAACCACAAATGATGATTATGCTTCCATTTCCCAGAAGGAGGATGAACCAGATGCACAAGACACTGAGAACAAGGATGAAAGCATGAATGTGTTACCTGAACAAGCTAGTTGTGAAACCAGTGGTCCTGTTTGTTTTCTTCAGGAGGATCAAAACCTAAAACCCGATTTTTCTTCAGCGAATGGCTGGGAAGATGAGGTTCCTTTACAAGTTCAAAATTCAGAAGTGCTGTTACTTCCATACAAAGAAGAAAGTTCCTCAGCCGGGGACAACATTGGAAGAGATGAGGACTCCTCATCTGTTTTGGGTGGTGGTCCAGAAGAAGCAGAGTTTGACGGCTTTGGTGGCTTATTTAATGAGCCTGAAGTTGTTGCTGGGCCTGCTCCCAGACCTTCTTCATCTGGTGATGTGGAAGCTGGCATTATCACTAGAAACAACAGTGAGTCTGATCCAGATGAAGTAGATGATACAGATTCTCCAGTCTCTGTAGAAAGTTGCTTGGCACATTTTATAAAACCCGAGCTTCTTTCAGATGAAAATGCTTGGCATTGTGAGAACTGTTCAAAAATCCTCCAACGTCAAAAGAAGGAAGTGAAAGAGAAGACAAGAACTGTATCCAATGGAAATGAAACTGGTAGTCACGAGGAATCATCACATGCATCTAACTCGTGTTCTTTTAAAGTCAGTAGCACAGAAAATGGAGATTTTCAAAATGAAAACAATGTAGAAGGTTCAGTTTCACATGTTCAACATGGCACAGAGCTTGAAAACAGTCAATCAGATGAGCTGAAACTGAACAAGTCTTCTTGTTCTCATAAAGCTTGCAATGAAGAAAGCTGTAATAATTCAGCTGCCACTGATTCTTGGAATACTGGAAATGTCCAACAAGATGCTCCAGTATTAGGTAATGATAACAACGACGCAGAAGAATGCAGCGAGAACGAGGCCGACTTAGATAGTATGAAAGTGAAGAGGGATGCAACTAAGAAGGTCCTCATTTACAAAGCTCCGCCTGTCTTGACCATTCATCTGAAGAGATTCAGCCAAGATGCTCGTGGCCGCTTAAGTAAGTTAAACGGTCATGTCACCTTCAGAGAAACAATGGATCTTAGACCGTATATTGATCCCAGGTGTATAAATGAAGAGAAGTATGAATACAACTTGGTTGGTCTAGTGGAGCACTCAGGAACCATGAGAGGGGGTCACTATGTTGCCTATGTGAGAGGGGGCCTGAGGAACAGAGGGAAGGTTGATAATAAAGAATGTGAGACTTCCACATGGTATCATGCGAGTGATGCATATGTGCGTGAAGTTTCTCTTGATGAAGTTCTTCGCTGTGAGGCATACATTTTGTTCTATGAAAGAAATTGA 4482 0.4056 MKLQRLLTTVLLLTVTTLNNVLGAFVGVNIGSDVSDLPSASNVVTILKSHQITHVRLYDANPHMLQALSNTGIEVLVGVTDEEILTIGDSPSVAASWITKNVAAYMPHTNITSIAVGSQVLTSIPNVAPVLVPAMNHLHSALVASNLHFRVKVSTPQSMDLIPRPFPPSTATFNSSWNSTIHQLLQFLKNTNSSYMLNAYPYYGYTNGDGIFPIEYALLRSLPLVKKIVDPNTLLHYDSMFDAMVDATYYSIRALNFNDIPIVVTESGWPSLGGSNEQDANVENAETYVNNLILRVLNDSGPPSQPKIPINTYIYELFDEDMRKGPISERHWGLFYSNGSSVYPLSFTGSDKIFGNSSMSFCVAKDGADAEKIEAGLDWACGQGRANCAAIQAGRPCFFPNNVKSHASYAYNDYYQKMHSAGGTCDFDDTAIITTEDPSYGSCIYAGSSNLSTGDGSLPSMALGPVGPVGVGERGALPPHSLRIFQSPIFDSLHSPSTSTHSFKTLVSNLPLAPPDFAGTMGKKVNRKTRSAVKEKVVAIGSSPKNITESCNPAIEAVDEGASVAKETISCPHLVKGVNLDKLSDKIKSSGSIRCEDCRQGAVDRRGGRGKGKHGKKKGSASLDSKSDLKSIWVCLECGQHTCGGVGLPTTPHCHAVGHARKTRHPLVVHFEKPQLCWCFPCNMLIQVDKIEKTDEASHSISDVVKLFKGRSSEKSSVDIEDVSIGDGSVTSEIKSKSSITSDSYGQGCYVVRGMVNLGNTCFFNSIMQNLLAMNKLRDNFLELDAPVGPLISSLKKLFTETNPELGFKNTINPRSFFGSVCTKSPQFRGYQQHDSHELLRCLLDGLSTEELAGRKQNGSLKTDRASSNTLVDALFGGQISSTVCCNECGHSSTVYEPFLDLSLPVPNKKPPPRKAQQVSRTKKTKLPPKKGGKSRVKVSKDADLLPVKNVPSQSSSHESSCPDQSVISNAEEMVASSGDSTVLGSEEISSVANKEDLLPPNLVTVGESQQMQVLDNDANKTSELSDDFVWLDYVEAETTNDDYASISQKEDEPDAQDTENKDESMNVLPEQASCETSGPVCFLQEDQNLKPDFSSANGWEDEVPLQVQNSEVLLLPYKEESSSAGDNIGRDEDSSSVLGGGPEEAEFDGFGGLFNEPEVVAGPAPRPSSSGDVEAGIITRNNSESDPDEVDDTDSPVSVESCLAHFIKPELLSDENAWHCENCSKILQRQKKEVKEKTRTVSNGNETGSHEESSHASNSCSFKVSSTENGDFQNENNVEGSVSHVQHGTELENSQSDELKLNKSSCSHKACNEESCNNSAATDSWNTGNVQQDAPVLGNDNNDAEECSENEADLDSMKVKRDATKKVLIYKAPPVLTIHLKRFSQDARGRLSKLNGHVTFRETMDLRPYIDPRCINEEKYEYNLVGLVEHSGTMRGGHYVAYVRGGLRNRGKVDNKECETSTWYHASDAYVREVSLDEVLRCEAYILFYERN 1493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g01942 1493 MobiDBLite consensus disorder prediction 916 934 - -
Car05g01942 1493 MobiDBLite consensus disorder prediction 949 965 - -
Car05g01942 1493 Gene3D Cysteine proteinases 1175 1244 - -
Car05g01942 1493 SUPERFAMILY Cysteine proteinases 752 1492 IPR038765 -
Car05g01942 1493 Pfam X8 domain 361 431 IPR012946 -
Car05g01942 1493 CDD Peptidase_C19K 1364 1491 - -
Car05g01942 1493 Gene3D Glycosidases 25 354 - -
Car05g01942 1493 MobiDBLite consensus disorder prediction 602 623 - -
Car05g01942 1493 MobiDBLite consensus disorder prediction 1042 1064 - -
Car05g01942 1493 Gene3D Cysteine proteinases 735 938 - -
Car05g01942 1493 SMART Zf_UBP_1 623 676 IPR001607 GO:0008270
Car05g01942 1493 MobiDBLite consensus disorder prediction 1121 1175 - -
Car05g01942 1493 MobiDBLite consensus disorder prediction 1232 1298 - -
Car05g01942 1493 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 754 769 IPR018200 GO:0004843|GO:0006511
Car05g01942 1493 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 1423 1440 IPR018200 GO:0004843|GO:0006511
Car05g01942 1493 MobiDBLite consensus disorder prediction 1323 1339 - -
Car05g01942 1493 SUPERFAMILY RING/U-box 569 687 - -
Car05g01942 1493 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
Car05g01942 1493 SMART X8_cls 360 445 IPR012946 -
Car05g01942 1493 Pfam Glycosyl hydrolases family 17 26 347 IPR000490 GO:0004553|GO:0005975
Car05g01942 1493 Pfam Ubiquitin carboxyl-terminal hydrolase 754 1490 IPR001394 GO:0004843|GO:0016579
Car05g01942 1493 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 458 IPR044965 GO:0004553|GO:0005975
Car05g01942 1493 Gene3D Cysteine proteinases 1250 1493 - -
Car05g01942 1493 MobiDBLite consensus disorder prediction 1323 1353 - -
Car05g01942 1493 Gene3D - 356 453 - -
Car05g01942 1493 Pfam Zn-finger in ubiquitin-hydrolases and other protein 595 688 IPR001607 GO:0008270
Car05g01942 1493 MobiDBLite consensus disorder prediction 1242 1291 - -
Car05g01942 1493 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 566 705 IPR013083 -
Car05g01942 1493 ProSiteProfiles Zinc finger UBP-type profile. 569 705 IPR001607 GO:0008270
Car05g01942 1493 MobiDBLite consensus disorder prediction 905 965 - -
Car05g01942 1493 MobiDBLite consensus disorder prediction 1045 1064 - -
Car05g01942 1493 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 753 1493 IPR028889 -
Car05g01942 1493 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 2 458 - -
Car05g01942 1493 SUPERFAMILY (Trans)glycosidases 26 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g01942 Car-Chr5 64702585 64712259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g01942 1 470 Glycoside Hydrolase AT3G13560 65.605 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g01942 K11844 - gmx:100780952 1376.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g01942 05 64702585 64712259 Car05g01942 05 64702585 64712259 ECH